arpc5a (arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183)


Basic Information

Item Value
gene id arpc5a
gene name arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 9746570 ~ 9751212 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU15832
GCGGAAGTCAACAAGCGCCGAGCTTCTTCCTGTAAGTGCTCGGACTGTTCTGTATAAACTGACATATTCCGATTGATTGACCTCGCCAGTCATGTCGAAGAACACGGTGTCCGATCGATTCAGGAAGGTCGATGTGGATGAGTACGACGAAAACAAGTTTGTCGACGAGGAGGACGGCGGAGAAAATCAACTGGGTCCGGATGAGGCTGAGGTGGACTCTCTCATCAGATCATATCCTTTCAGTCCCACGACTCTTACTGCTGCTTTCCGTGGATTTCCTGACTGCTTACAGTATAGCATTTGGTTAGTCTGCTCCTGAAAGCGCTTGGTGTTGAATCGCTATGATAGATTATTTCTGTCCTGTCGTCCAGACATGGGTGTGGTAGTCACTTCATTCATTTCGGATATGCACGTTTCACAATGTCAGCACAAGTTTGCACCGCGGATGCCACTCTTTGGGTTCTTTTAAAACCGTCGAATTGCGGCTGTAATGTTTAAAGTGCAACACGTGAAGCTGTATCTTATAGATGTGGCGATTACATAGAATTAGGTTGCTGTAGAAACACTTCCGGATGCCACCGACTTCCGGTTCCACGGGGGTACGTTTAATACGTTTAATATGTACGTTTAATATGTACTTTCCGACAACTTTTAATAGTTCGTGTATAGCGTTACTTAAAGAGTGAATGTTATTCGCCGCTGGATGTGATTTCTTTCCTTAGCGCGCGACACGGGGAACCTGATGGGAGCCCTGCAGGCGGTCCTGAAGAACCCGCCCATCAACACCAAGAACCAGAATGTGAAGgaaCGGGCTGAAAGCCTTGTGTTGAAAGTGCTCAGCTCTTTCAAGACTAGCGATATAGAAAAGGCTGTTCAGTCTCTAGATAAAACTGGAGTCGATCTCCTGATGAAATACATCTACAGAGGCTTTGAAAGACCCTCAGACAACAGCAGTGCCATCCTACTGCAGTGGCATGAAAAgGCTCTCTCAGCGGGTGGCGTGGGCTCCATCGTCAGAGTGCTCACGGCCAGGAAGACTGTGTAAACGTCACCACCTCAGCACCGAGGCAGGGTTAGCGGAGGGACTGGCTGGCTCTGGTTTCTGCCCACACTGCCAAACTGTGGAGGATGTCCAGTCAatcaccttttcttttttttttttttttatataatataaagcgATCAAACATTACAGTCCCATTGGGTTTCTTGCAGTGAAGATAAGCACCTTGGATCTGTGTTAACAGAACGGTGATGAGCAAATGTCATTGTTGACCTCGGTAGATACTAAGCACAGACATTTTAGCTGTTATCAAAGGAAGCGTCTCTTTACTTGTCCGCTTCACGCACTTCACATTCTCATACCTGTCCTCATGTAAAGtctcaaaaaggaaaaaacggAACAAAATGTATGTGTACTTGCATGACTGAATCTTTACAGTCATGTCATTACAGTGGTATGTGATGCtacagtggggttttttttttttttttttacttaaagggatagtccatccaaaaatgaaaattatgtcacCATTTGCTCAGGCTCATGCTggtccaaacctgtatgactggatcaaaaaagaagatattttgaagtcCAAACAACATTCCATGTTTTCGTTTTTTGTTAAACGGACgaaagaaaatcaaacacattaggatgaggatgaagaaaCGATGACGGCGTTTTCATTTTGCCGTGAAACATCCCTTTAAGAAAATCGATCAAGCTTTAGTTTgtagtatttttactttacactCTCTTCTTCATctgcttctttttaaaacataatcagAGATGCTCTGTGGAACACGAAACATCAGTATTTGCGTTTTCCTACTTGCATGCATTGCTTTATACATAAGTTCAGAGCTGGTTGTTGAATCTAGCCTTATATGAACACCAGTGCTTTCCAGCTCAGTTTCTTGTGATCGGAGTGCTTGTTTTCCTCCACAGTCCTAGTTTCTAGCATCTCTTTGGTTTCTCATCACATCGGGATCGcgttttaagaaacaaaaaggGAATGACTTTTCTTGAGTTGCCAAAAAAGGTTTCTTTTTGTCATAATTGTTGATTAATGCTAGTGTGTTTTTGTACTCTCTACAAAAAcgatgtttaatttttataacgCCGAGTATTATTAGGTTGTCCAACAAAAGCTTGTGTATATTTTGATCGCCGCATTTTTGAACTGTATTAGGATGTTAGCAGTTGTAGAACACGATCGACACCGACATGTACTTTGAACTCAGACTTTCTTTCAGGTGCTGATGATACAGCTAACCTCTGAGACTCGTGTGCTCTCTCCACTAACACCAAACACGCAGCTAAGCACTCAAGCTGCGAAGGAGAATTTCGCTTCCTCTGCGGTCTGCTTGTTTTCGCCATACTTGAAGCCATACATAAACAACCCTAGGAAGTCTCCGCTTGTTCATTTGCGATTCCAAGTGAATGTTGAGTTTGCATCACACCGGTTAATCATGTGGTTAAGTGCAAAAATTATGAAATGGTTTACCAACTGCCTTATAAAATATTCCTTTTATATCGTATGGtccttttgaaaaataaatgagatgaATGCAAC
>XM_043261072.1
CACTGCCGCTAGGGGGCTTTCTATGCGGAAGTCAACAAGCGCCGAGCTTCTTCCTGTAAGTGCTCGGACTGTTCTGTATAAACTGACATATTCCGATTGATTGACCTCGCCAGTCATGTCGAAGAACACGGTGTCCGATCGATTCAGGAAGGTCGATGTGGATGAGTACGACGAAAACAAGTTTGTCGACGAGGAGGACGGCGGAGAAAATCAACTGGGTCCGGATGAGGCTGAGGTGGACTCTCTCATCAGATCGGGGAACCTGATGGGAGCCCTGCAGGCGGTCCTGAAGAACCCGCCCATCAACACCAAGAACCAGAATGTGAAGgaaCGGGCTGAAAGCCTTGTGTTGAAAGTGCTCAGCTCTTTCAAGACTAGCGATATAGAAAAGGCTGTTCAGTCTCTAGATAAAACTGGAGTCGATCTCCTGATGAAATACATCTACAGAGGCTTTGAAAGACCCTCAGACAACAGCAGTGCCATCCTACTGCAGTGGCATGAAAAgGCTCTCTCAGCGGGTGGCGTGGGCTCCATCGTCAGAGTGCTCACGGCCAGGAAGACTGTGTAAACGTCACCACCTCAGCACCGAGGCAGGGTTAGCGGAGGGACTGGCTGGCTCTGGTTTCTGCCCACACTGCCAAACTGTGGAGGATGTCCAGTCAatcaccttttcttttttttttttttttatataatataaagcgATCAAACATTACAGTCCCATTGGGTTTCTTGCAGTGAAGATAAGCACCTTGGATCTGTGTTAACAGAACGGTGATGAGCAAATGTCATTGTTGACCTCGGTAGATACTAAGCACAGACATTTTAGCTGTTATCAAAGGAAGCGTCTCTTTACTTGTCCGCTTCACGCACTTCACATTCTCATACCTGTCCTCATGTAAAGtctcaaaaaggaaaaaacggAACAAAATGTATGTGTACTTGCATGACTGAATCTTTACAGTCATGTCATTACAGTGGTATGTGATGCtacagtggggttttttttttttttttttacttaaagggatagtccatccaaaaatgaaaattatgtcacCATTTGCTCAGGCTCATGCTggtccaaacctgtatgactggatcaaaaaagaagatattttgaagtcCAAACAACATTCCATGTTTTCGTTTTTTGTTAAACGGACgaaagaaaatcaaacacattaggatgaggatgaagaaaCGATGACGGCGTTTTCATTTTGCCGTGAAACATCCCTTTAAGAAAATCGATCAAGCTTTAGTTTgtagtatttttactttacactCTCTTCTTCATctgcttctttttaaaacataatcagAGATGCTCTGTGGAACACGAAACATCAGTATTTGCGTTTTCCTACTTGCATGCATTGCTTTATACATAAGTTCAGAGCTGGTTGTTGAATCTAGCCTTATATGAACACCAGTGCTTTCCAGCTCAGTTTCTTGTGATCGGAGTGCTTGTTTTCCTCCACAGTCCTAGTTTCTAGCATCTCTTTGGTTTCTCATCACATCGGGATCGcgttttaagaaacaaaaaggGAATGACTTTTCTTGAGTTGCCAAAAAAGGTTTCTTTTTGTCATAATTGTTGATTAATGCTAGTGTGTTTTTGTACTCTCTACAAAAAcgatgtttaatttttataacgCCGAGTATTATTAGGTTGTCCAACAAAAGCTTGTGTATATTTTGATCGCCGCATTTTTGAACTGTATTAGGATGTTAGCAGTTGTAGAACACGATCGACACCGACATGTACTTTGAACTCAGACTTTCTTTCAGGTGCTGATGATACAGCTAACCTCTGAGACTCGTGTGCTCTCTCCACTAACACCAAACACGCAGCTAAGCACTCAAGCTGCGAAGGAGAATTTCGCTTCCTCTGCGGTCTGCTTGTTTTCGCCATACTTGAAGCCATACATAAACAACCCTAGGAAGTCTCCGCTTGTTCATTTGCGATTCCAAGTGAATGTTGAGTTTGCATCACACCGGTTAATCATGTGGTTAAGTGCAAAAATTATGAAATGGTTTACCAACTGCCTTATAAAATATTCCTTTTATATCGTATGGtccttttgaaaaataaatgagatgaATGCAA

Function

symbol description
arpc5a Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Orthologous to human ARPC5 (actin related protein 2/3 complex subunit 5).
arpc5 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion. Part of Arp2/3 protein complex. Biomarker of lung non-small cell carcinoma and lung squamous cell carcinoma.

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 5-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15832 True 2591 TUCP 0.39 3 9746594 9751212
XM_043261072.1 False 2113 mRNA 0.42 4 9746570 9751211

Neighbor

gene id symbol gene type direction distance location
pla2g4aa pla2g4aa,LOC107722605,LOC107693742,LOC107718137,LOC107677770,LOC107594671,LOC107589895 coding upstream 1462 9731529 ~ 9745108 (+)
odr4 c2h1orf27,LOC107693744,LOC107722540,LOC107718140,LOC107589896 coding upstream 36719 9702238 ~ 9709851 (+)
prg4a LOC107594674,LOC107722510,LOC107693698,LOC107589871,LOC107677759 coding upstream 64601 9676255 ~ 9681969 (+)
rxrga rxrga,LOC107693746,LOC107677771,LOC107718143,LOC107589872,LOC107722630 coding upstream 74053 9658386 ~ 9672517 (+)
olfml2bb olfml2bb,LOC107693709,LOC107722514,LOC107589916,LOC107677754,LOC107594675 coding upstream 116375 9624718 ~ 9630195 (+)
ivns1abpb ivns1abpb,LOC107722586,LOC107693739,LOC107718136,LOC107589867,LOC107677749 coding downstream 6967 9758179 ~ 9766326 (+)
niban1b LOC107722650,LOC107693736,LOC107564706,LOC107718132,LOC107677773,LOC107589866 coding downstream 30553 9781765 ~ 9805690 (+)
prrx1a prrx1a,LOC107693734,LOC107722649,LOC107564708,LOC107589863,LOC107718131,LOC107691682 coding downstream 100073 9851285 ~ 9856761 (+)
mllt1b LOC107722626,LOC107718125,LOC107564713,LOC107691596,LOC107589857 coding downstream 166119 9917331 ~ 9927244 (+)
sap130b sap130,sap130b,LOC107693727,LOC107691745,LOC107589892,LOC107722618 coding downstream 177214 9928426 ~ 9940747 (+)
G10604 NA non-coding upstream 142727 9602366 ~ 9603843 (+)
G10581 LOC107722512,LOC107693701,LOC107594678 non-coding upstream 169164 9577171 ~ 9577406 (+)
G10571 NA non-coding upstream 173777 9486177 ~ 9572793 (+)
G10557 NA non-coding upstream 291825 9454366 ~ 9454745 (+)
G10466 NA non-coding upstream 529906 9215505 ~ 9216664 (+)
G10674 kifap3b,LOC107693735,LOC107564707,LOC107722509,LOC107718166 non-coding downstream 74403 9825615 ~ 9826220 (+)
G10738 NA non-coding downstream 237931 9989143 ~ 10010746 (+)
G10749 NA non-coding downstream 241572 9992784 ~ 9993395 (+)
G10752 NA non-coding downstream 260725 10011937 ~ 10014366 (+)
G10753 NA non-coding downstream 263347 10014559 ~ 10015822 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 574655 9162611 ~ 9171915 (+)
G10212 NA other upstream 1638793 8106865 ~ 8107777 (+)
G10108 NA other upstream 2164185 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 2446469 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 2640778 7098303 ~ 7105792 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 160416 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 407320 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 911517 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 959918 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 1368642 11119854 ~ 11135991 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_06044460_06046940 ARPC5, ARPC5B, ARPC5A coding CI01000004 null 6044127 ~ 6048111 (+)
rainbow trout (Oncorhynchus mykiss) G961 NA unknown NC_048565.1 CM023219.2 2078898 ~ 2079603 (+)
mexican tetra (Astyanax mexicanus) LOC103032016 arpc5b,arpc5,LOC103032016,LOC108431159,LOC104921830,LOC107698380,LOC107599090,LOC103045524 misc NC_035897.1 CM008300.1 2910754 ~ 2970340 (-)