selenof (selenof,sep15,LOC107693704,LOC106598901)


Basic Information

Item Value
gene id selenof
gene name selenof,sep15,LOC107693704,LOC106598901
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10158532 ~ 10161809 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16057
CTGAACTCGGTGGGCGAGTGGAAGAGAAACACTGATGGCGGGGGAGGTGTACCTGCTTTGGTTACTGCCGTTATTACAAACGCTGGCATCTTATGGAGCGGAGCTCTCCTCTGAGGCCTGCAGGGAGATGGGCTTCTCCAGCAATCTCCTGTGCAGCTCCTGTGATCTCCTGGGTCAGTTCAGCCTGGGCCAGTTAGACCTTCCCTGCAGGCAGTGCTGCCAAGAGGAGGCTCAGCTGGAGTCTAGGAAGCTCTATCCAGGAGCAATACTTGAGGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGGAGTGACAAGCCAAAGATGTTCAGGGGTCTTCAGATCAAGTATGTGAGAGGCTCAGACCCTGTACTAAAGCTGCTGGACGATAACGGGAACATTGCTGACGAGCTCAGCATCCTCAAGTGGAACACAGACAGCGTCGAAGAATTTCTTAGTGAGAAGTTAGAACGAATTTAGACTCGGTTTCATATTTAAAGCCAGCTTTTCACTATTAGCTTTTTTGTATAAATCTAAATTTCAAAGAACCACTGTTAATTTTCATGCTTGATAATGGACATTAaaacattgttctttttttttttatataaatctttGGAAGTAAATGCATCAGTGTCTGGTTTAAGGTTAAGTGATCAGGACATACTGTacttatttttagtaaattctTCTCCTGCATATTGTTGAATCATTGATGTGCTGTGACCTTTTATACATCTTGTGTCTGAGTGAAGCCTGTTGAATGTGCTGGTTTGGTAAAGCTTGTGGCGACTCTTCAGAAGCGCATGTTTATGTGGATTTGCACGTTAGTGAAGGCCTGACAGTAAACCAGTTCCTGGCATGTGAGGCCTGAAGACCCTGTGTGACTCTCTGAGCATGTTGTTATGGCGAGAACCTTCGAGCTCTATCCCAGTATTGGACGCTGGAACCTcctcatttaaatgtttcaaaaaattCAATTTGAACTCAATTTCATtagcacacaaacaaataaacctgtttttcatattaatgtttttgtttgactttttttcgcCCATTGC
>XM_043223876.1
GTGGGTGTGACGCACTTCCTGCTGAACTCGGTGGGCGAGTGGAAGAGAAACACTGATGGCGGGGGAGGTGTACCTGCTTTGGTTACTGCCGTTATTACAAACGCTGGCATCTTATGGAGCGGAGCTCTCCTCTGAGGCCTGCAGGGAGATGGGCTTCTCCAGCAATCTCCTGTGCAGCTCCTGTGATCTCCTGGGTCAGTTCAGCCTGGGCCAGTTAGACCTTCCCTGCAGGCAGTGCTGCCAAGAGGAGGCTCAGCTGGAGTCTAGGAAGCTCTATCCAGGAGCAATACTTGAGGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAAGCTTTTGTCAGGAGTGACAAGCCAAAGATGTTCAGGGGTCTTCAGATCAAGTATGTGAGAGGCTCAGACCCTGTACTAAAGCTGCTGGACGATAACGGGAACATTGCTGACGAGCTCAGCATCCTCAAGTGGAACACAGACAGCGTCGAAGAATTTCTTAGTGAGAAGTTAGAACGAATTTAGACTCGGTTTCATATTTAAAGCCAGCTTTTCACTATTAGCTTTTTTGTATAAATCTAAATTTCAAAGAACCACTGTTAATTTTCATGCTTGATAATGGACATTAaaacattgttctttttttttttatataaatctttGGAAGTAAATGCATCAGTGTCTGGTTTAAGGTTAAGTGATCAGGACATACTGTacttatttttagtaaattctTCTCCTGCATATTGTTGAATCATTGATGTGCTGTGACCTTTTATACATCTTGTGTCTGAGTGAAGCCTGTTGAATGTGCTGGTTTGGTAAAGCTTGTGGCGACTCTTCAGAAGCGCATGTTTATGTGGATTTGCACGTTAGTGAAGGCCTGACAGTAAACCAGTTCCTGGCATGTGAGGCCTGAAGACCCTGTGTGACTCTCTGAGCATGTTGTTATGGCGAGAACCTTCGAGCTCTATCCCAGTATTGGACGCTGGAACCTcctcatttaaatgtttcaaaaaattCAATTTGAACTCAATTTCATtagcacacaaacaaataaacctgtttttcatattaa

Function

symbol description
selenof Predicted to enable oxidoreductase activity and selenium binding activity. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen. Is expressed in several structures, including axis; mesoderm; otic placode; pectoral fin bud; and pectoral fin musculature. Orthologous to human SELENOF (selenoprotein F).

NR:

description
selenoprotein F-like

GO:

id name namespace
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16057 True 1080 lncRNA 0.39 5 10158553 10161809
XM_043223876.1 False 1070 mRNA 0.44 5 10158532 10161778

Neighbor

gene id symbol gene type direction distance location
gtf2b gtf2b,LOC107693714,LOC107585659,LOC107718116 coding upstream 38593 10114573 ~ 10119939 (+)
znf644a LOC107722621,LOC107693692,LOC107589847,LOC107586139 coding upstream 51108 10096409 ~ 10107424 (+)
cldn18 LOC107722530,LOC107693705,LOC107718157,LOC107586152,LOC107589887 coding upstream 78587 10078400 ~ 10079945 (+)
LOC122324805 LOC107695158,LOC107722506,LOC107586159,LOC107691708 coding upstream 81198 10075157 ~ 10077334 (+)
stk25b stk25b,LOC107693719,LOC107585675,LOC107722570,LOC107589848,LOC108432500,LOC108278137 coding upstream 96816 10055965 ~ 10061716 (+)
fam110b fam110b,LOC107585622,LOC107722620,LOC107693712,LOC107691438,LOC107589841,LOC107718111 coding downstream 6431 10168240 ~ 10198276 (+)
LOC122355329 cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110 coding downstream 51082 10212891 ~ 10215867 (+)
rab2a rab2a coding downstream 163249 10325058 ~ 10336681 (+)
chd7 chd7,LOC107722533,LOC107718105,LOC107689390,LOC107589837,LOC107585562,LOC107688517 coding downstream 175714 10337523 ~ 10378222 (+)
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding downstream 260927 10422736 ~ 10425446 (+)
G10838 NA non-coding upstream 16561 10141342 ~ 10141971 (+)
G10819 NA non-coding upstream 94718 10058532 ~ 10063814 (+)
G10753 NA non-coding upstream 142710 10014559 ~ 10015822 (+)
G10752 NA non-coding upstream 144166 10011937 ~ 10014366 (+)
G10738 NA non-coding upstream 147786 9989143 ~ 10010746 (+)
G10883 NA non-coding downstream 47754 10209563 ~ 10209851 (+)
G10902 NA non-coding downstream 229860 10391669 ~ 10391956 (+)
G10903 NA non-coding downstream 230884 10392693 ~ 10393150 (+)
G10901 NA non-coding downstream 260128 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding downstream 283372 10445181 ~ 10482952 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 241671 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 407320 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 986617 9162611 ~ 9171915 (+)
G10212 NA other upstream 2050755 8106865 ~ 8107777 (+)
G10108 NA other upstream 2576147 7504622 ~ 7582385 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 500920 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 549321 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 958045 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 1067951 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 1141869 11303678 ~ 11338469 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G395340 NA non-coding CI01000225 null 462156 ~ 522868 (-)
rainbow trout (Oncorhynchus mykiss) LOC110508961 LOC106598901 misc NC_048592.1 CM023246.2 31490899 ~ 31504889 (+)
bowfin (Amia calva) G144050 selenof,LOC106598901 unknown CM030140.1 CM030140.1 8353989 ~ 8377001 (-)