G10838


Basic Information

Item Value
gene id G10838
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10141342 ~ 10141971 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16087
acagcTCACCTCGCTGAAAATATCCTTAGCGGGAGttttaaaaaagtctttattttgaataaagcaaatattacgtcacacacactcaatgtACTTTAAAGATGGGTCCTTTATAGCAAGCTcagaatgttttataatttaaaagaaaacaaaaaacacacaacacctTTCTAAGAAATCACCTGGAGGTCTGCTTCCAAGGATACAGAGAACTTCCAAGGATACAGAGATTGATTTATTTGACAGGTTAATTGCAGAAGAATCCGTTCCGTGACCAAAAGATAAATGTCACTCACACACCAGCGGAAGGTGGTGTGTTTTCACTGCCCGAAAGTGAAGTACACCGCAGTATATCAAAACTAACAGACACCAAAACTAAACTGCAGGTCCACAACATATAAGAAAGGTCATTCTGTGCAAAACCAATTCATAATTGATTATGATACGCAAGGATGCTCGCTGATATTGCTTTTCAGCTCCGATGGTTAACCTCATTTAAACTGCCAGATATTACCATATACGTTGAATTTCCACAATATTACACCTTCACAAAATGGTCTGTAGCTGACAAAGCAACTGCCGGGTTATATGAGGTCTTGAATATGAAACTAGGTGCTCTATTAGGGTCTC

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0006684 sphingomyelin metabolic process biological_process
GO:0097164 ammonium ion metabolic process biological_process
GO:0007034 vacuolar transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16087 True 630 lncRNA 0.38 1 10141342 10141971

Neighbor

gene id symbol gene type direction distance location
gtf2b gtf2b,LOC107693714,LOC107585659,LOC107718116 coding upstream 21403 10114573 ~ 10119939 (+)
znf644a LOC107722621,LOC107693692,LOC107589847,LOC107586139 coding upstream 33918 10096409 ~ 10107424 (+)
cldn18 LOC107722530,LOC107693705,LOC107718157,LOC107586152,LOC107589887 coding upstream 61397 10078400 ~ 10079945 (+)
LOC122324805 LOC107695158,LOC107722506,LOC107586159,LOC107691708 coding upstream 64008 10075157 ~ 10077334 (+)
stk25b stk25b,LOC107693719,LOC107585675,LOC107722570,LOC107589848,LOC108432500,LOC108278137 coding upstream 79626 10055965 ~ 10061716 (+)
fam110b fam110b,LOC107585622,LOC107722620,LOC107693712,LOC107691438,LOC107589841,LOC107718111 coding downstream 26269 10168240 ~ 10198276 (+)
LOC122355329 cyp7a1,LOC107722516,LOC107693703,LOC107586715,LOC107691428,LOC107589909,LOC107718110 coding downstream 70920 10212891 ~ 10215867 (+)
rab2a rab2a coding downstream 183087 10325058 ~ 10336681 (+)
chd7 chd7,LOC107722533,LOC107718105,LOC107689390,LOC107589837,LOC107585562,LOC107688517 coding downstream 195552 10337523 ~ 10378222 (+)
c2h7orf25 zgc:55781,cunh7orf25,LOC107689392,LOC107722560,LOC107718178,LOC107589835,LOC107585545 coding downstream 280765 10422736 ~ 10425446 (+)
G10819 NA non-coding upstream 77528 10058532 ~ 10063814 (+)
G10753 NA non-coding upstream 125520 10014559 ~ 10015822 (+)
G10752 NA non-coding upstream 126976 10011937 ~ 10014366 (+)
G10738 NA non-coding upstream 130596 9989143 ~ 10010746 (+)
G10749 NA non-coding upstream 147947 9992784 ~ 9993395 (+)
G10883 NA non-coding downstream 67592 10209563 ~ 10209851 (+)
G10902 NA non-coding downstream 249698 10391669 ~ 10391956 (+)
G10903 NA non-coding downstream 250722 10392693 ~ 10393150 (+)
G10901 NA non-coding downstream 279966 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding downstream 303210 10445181 ~ 10482952 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 224481 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 390130 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 969427 9162611 ~ 9171915 (+)
G10212 NA other upstream 2033565 8106865 ~ 8107777 (+)
G10108 NA other upstream 2558957 7504622 ~ 7582385 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 16561 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 520758 10662729 ~ 10665110 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 569159 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 977883 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 1087789 11229760 ~ 11264234 (+)

Expression


Co-expression Network