hfm1 (hfm1,LOC107722645,LOC107586144)


Basic Information

Item Value
gene id hfm1
gene name hfm1,LOC107722645,LOC107586144
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10080182 ~ 10095857 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16111
TCTTTCCAACAAgtctgaaaggttttttttttaatctttcaaaGGAAAAATGGGACAGTATGACAAGGAGGTGGAAGGATAACTGTTTAGTGCCATCTGTTAGTCTCTTCCTCATTGATGAGATACATGTGGTCAAAGACAAAACCCGTGGAGCTACTCTTGAAGTTGTGGTCAGCCGAATGAAAACCATGCACTCATATCAACTGGCTGCAAAACCAGAATCAAAAGCATCAACAAGATTTGTGGCTGTC
>TU16112
CTACGAAATCACATGAACTGGAAGAACGTGATTTTTGGACCCATGAACCTTCTAGAGAAAGAGATCAAGCTGTCGACCAGACACGTTTTGTGGAAGCGAGGTCTTTACCAACTGCCAGTGCTCCTCCCTTCAGGACTCGGTTGTTCAGAGCTCCCACAAGAAGGATCTCAGTGAATGATGAAGAAGGTATCCCAAATCAGATGATGTCAACAACAAATGACACAGGTTTCCTTGGTCAGGTTGCCATGACAACCACCGGTCCGCAGACTGCACATGCTGTTGCTACCTGTAGTGCCTTTATTGACTTGAGCCAAACAGTGCAAACGTGTGATGTAGCTTCAAAAACAAGCCATAATCTCCCGTTTGGTTTCAGGCCTACAGAATCTGAAGCTGCTAAATTCAGAAGCGTGTTTAAAGAATTCCCTTACTTCAACTATGTGCAGTCCCG
>TU16114
GTTAGATAAAACGTACGCATATGGGATGTTTTTAGACTGCTGATAGCCACTGTACTATTTTTGTACTAACCGAATGTACCAAAAGACATTCAACCGCATACCTTACTCGCTCAGCTAATTATTTTACCTCAGAGAAACGATAGCCAGTGGCTAAAAGCTAAACTCGAGGGGTTAACACACAgaacagtaaataaatagcGTTGCTTCGGTGTGCTGCAATGCCTAATAGCAGCTTTACATTTCAGTGTTATATATCACAGTTGTTCTTTTAGGATGTCGTTGGCAAGCGCAGGATGTTAGACTCAGAAGATGGCGTTTCGTCAGTGGATAACCTGTTTTATGACGGGCCAGTAATTCATAAAGTGAAACCATTGTGTCAGGGACAAGGC
>XM_043256410.1
ACATGATTGTTTTGctgtaataaaatgacaatataataCTGTGATATGATCGCGTGATCTTGCGCGCGATTCACACATTTTACAGCTCGCGGGTTGACTTGCCGCCTTCAAGAGAGCGCCAGTATTCCTCGCAAATAGATAAAACGTTAGATAATGTTAGATAAAACGTACGCATATGGGATGTTTTTAGACTGCTGATAGCCACTGTACTATTTTTGTACTAACCGAATGTACCAAAAGACATTCAACCGCATACCTTACTCGCTCAGCTAATTATTTTACCTCAGAGAAACGATAGCCAGTGGCTAAAAGCTAAACTCGAGGGGTTAACACACAgaacagtaaataaatagcGTTGCTTCGGTGTGCTGCAATGCCTAATAGCAGCTTTACATTTCAGTGTTATATATCACAGTTGTTCTTTTAGGATGTCGTTGGCAAGCGCAGGATGTTAGACTCAGAAGATGGCGTTTCGTCAGTGGATAACCTGTTTTATGACGGGCCAGTAATTCATAAAGTGAAACCATTGTGTCAGGGACAAGGCTCCTGGACATTTGATGCTCCACCCTCATTATCACAAATACCTGCAACACAAGACATCCAGGGAGAGGCAGCACACCTTTTCTCCCTTAGTTGTTCGCAGAGATCAAAGAAATTTCTCCCTCCTGCACAAAAACCTATTTGCAATCCCATCTCAAGTGTCCAGTGGCAGACTACGAAATCACATGAACTGGAAGAACGTGATTTTTGGACCCATGAACCTTCTAGAGAAAGAGATCAAGCTGTCGACCAGACACGTTTTGTGGAAGCGAGGTCTTTACCAACTGCCAGTGCTCCTCCCTTCAGGACTCGGTTGTTCAGAGCTCCCACAAGAAGGATCTCAGTGAATGATGAAGAAGGTATCCCAAATCAGATGATGTCAACAACAAATGACACAGGTTTCCTTGGTCAGGTTGCCATGACAACCACCGGTCCGCAGACTGCACATGCTGTTGCTACCTGTAGTGCCTTTATTGACTTGAGCCAAACAGTGCAAACGTGTGATGTAGCTTCAAAAACAAGCCATAATCTCCCGTTTGGTTTCAGGCCTACAGAATCTGAAGGGTTATCTGGAAAAGGAACACTACGTCCAGTTTCTGAAATTCCTGCTAAATTCAGAAGCGTGTTTAAAGAATTCCCTTACTTCAACTATGTGCAGTCCCGAGCACTGGATGATGTtctgtacacaaataaaaattttgttgCCTGTGCTCCCACGGGCTCAGGGAAGACTGTGCTCTTTGAGCTGGCCATAGTTCGACTACTGATTGAGGCTTCAGATGCCTGGCACAATGTCAGAGCGGTGTACATGGCACCGATTAAGGCTCTTTGCAGTCAGCGTTTTGAAAACTGGAAACAGAAGTTTGGACCCCTTGGACTAAACTGCAAGGAGTTAACTGGAGACACAGAGATTGATGACATTTTTGAAATCCAGGATGCTCATCTGATTTTTACCACTCCTGAAAAATGGGACAGTATGACAAGGAGGTGGAAGGATAACTGTTTAGTGCCATCTGTTAGTCTCTTCCTCATTGATGAGATACATGTGGTCAAAGACAAAACCCGTGGAGCTACTCTTGAAGTTGTGGTCAGCCGAATGAAAACCATGCACTCATATCAACTGGCTGCAAAACCAGAATCAAAAGCATCAACAAGATTTGTGGCTGTCTCAGCTACCATCCCAAACATCCGGGACGTGTCTGAATGGCTTTCGGATGAGTCAGGGCCTGCCACTTGTCTGGAGATGGATGAGACTCACAGGCCTGTGAAACTGAGGAAAGTGGTTCTTGGGTTCCCCTGTGGAAGTAATCAGAATGAATTCAAGTTTGATCTTTCTCTCAGCTACAAAATGGCCAACATTATTCAGACATACTCTGATCAAAAGCCAACTCTTgtgTTTTGCTCCACGAGAAAAGGAGTTCAACAGTCTGCTTCTGTGCTTGCCAAGGATGCCAGATTCATTATGAGTCTTGACCACAAACAAAGATTGATGAAATATGCAAACTCTGTGCTTGATGCAAAACTCAAAGATCTATTTATTTGTGGCATTGGATATCATCATGCTGGCATGGATGTGTCAGACAGGAAACTGACTGAAGAAGCATTTACTATGGGTGACTTGCCAGTGTTATTTACAACCAGCACCCTTGCTATGGGTGTGAATCTGCCAGCCCACCTTGTGGTAATTAAATCCACAATCCACTATGTTGGAGGTGCATATGAAGAATACAGTGAAGCTGACCTTTTACAGATGATTGGGAGAGCTGGCAGACCTCAGtttgatacAACAGCAACCGCAGTGATCATGACCCGATCTCAGACAAAggacaaatacacacatttcttGAGTGGCATGGACAGCATAGAGAGCAGCTTGCATACAAACTTAGTGGAGCACTTGAATGCAGAGATAGTTCTTCATACCATATCTGACGTGAACATGGCTCTAGACTGGATCCGCTCCACCTTCCTGTACATCCGTGCtttaaaaaaccccaaacactACGGGATTTCTCCTGAGCTTGACAAATGTGGAATTGAAACTAAATTACAAGAGCTGTGTTTGAGGAACCTCAACTCTTTGGCCTCTGTCAACCTGATTACCATGGATGAAGACATTAACATCAAGCCCACAGAGACTGGAAAACTCATGGCCAGGTACTGTGTTGCTTTTGAAACTGTGAAGCAGTTCAGTATGGTGACAGGAACAGAGACCTTACCCGAGCTGATTGAAATGATATCGAAGGGGAAAGAATTCACTGATGTGCAGTTGAgagtaaatgaaaagaaaactttgAACATGTTGAACAAGGATAAGAACAGAACCACCATCAGgtTTCCTATGGAAGGAAAGATCAAAAGTAATGACATGAAAGTTAATTGTCTGATTCAAGCTCAGTTCGGCTGCATCCCTTTCCAGGAGTTTGGACTCGTACAGGACACTggaaaaatattcagaaatggaAATAGAGTCAGCAGATATCTGACTGAGTTTCTCAGTCATCACTCCAAATCAAATTTCTCTGCTCGACTCAACTCTTTAATTCTTGCCAAATGTTTTCGAGCCAAACTGTGGGAGAACTCGCCTTACGTCTCCAGACAGCTTGAGAGGATAGGATTAACACTTGCCACTGCTATGGTCAATGCTGGGCTTACAACATTCAGCAAAATTGAGCAAATCAGTCCTAGAGAATTAGAGATGATTGTGAACCGACACCCTCCTTTTGGGAACCAGATTAAGGAAGCTGTCAGCAAACTTCCGAAATATGAAGTCAGTTTGGAACAGATTCCACGATACAGTCTCTCCACAGCTGAGATTTCTGTCACATTGAACCTGATGAATTTCAAGGTGTTGGCACCGAAACAGACAGCACCCGACCATCATTATGTCACTCTCATTATTGGAGACTGTGACAATAATGTAGTCTTCCAGCAAAAAATTCTgAATGCATTGCTCTTGAAATCTGGGAGCTGGACAAAGAGAATAGAGGTGACAAGAGCACCTAAGGGAGAGGAGCTaagcattcatttgatcagCTCTGAATACGTGGGACTGGACGTTCAGCAGACGTACAGAGTCTTCTACTCAGGAGCAAAGAAGTTTGGAGCCAAGTCCTGCATTAGAGAGAACCCTACATGGAGAGTGCAGAGGATTCAcaacacagagaacacagaAGACCCTAAACTGACATCTCCAGCTCCATCAAACAGAGTGGCTCCAAATACAGACAGTGCCATATTTTGTACTATTAAGAGAGAGTGCCATCATGTTTGCAGAAACAAGGAGCTCTGTGGACATGACTGCTGCAAAGTTGGAGTGATGAAAAGGTCTTTAAGTCAGTCAAATTTCACCTCGTACCTCGACAATCTAAAAATGAGGAATGAGAGACTCTTTGAGACTCCTGTGAAACGTTTGAAGATGAAGATGAATAATGGGACAGCAGCTGCAAGCATGCAGCAGTTCTCATACAAACCCAAAGACACACTTCCTGCTGCCAAAAAGTTTGAGGGAAGTCAAAGTATATATGAAATCAAGGAGCTAGAGGCCAGCTTTGACACTCAGCATGAGAATTCATCATTTGAGTCACACCATGATGGTTATCATGATGAGCTGGGAGACTTTTATTCTGAAATTGGAGACCCGGTATTAGAACATCCTCAGACATTGGCTTTACCTCaaaGAGTTTTGATTCACAACCAACTCAAGCCATGCAACGATGGACAGATGAACAGAACCAATGCTGTTAAAGCCAGTGTTAATACTGCCCGTGCAACCTCACAGCACAGTGCTGACTTGggtgtgacctttgacctgggAGTAAATGATTGGGATGATTTTGATGATGGTAACCTGGTTGAAGCTAGTGAGGTGTTCTGTGATTCCAAGCTATGCAACCCGATGACAGACCGTGGTCAACCTTCAAAAGCTGGATGTTTGACTTCAGCCTCACAATGTACTGTCCAAACCATACAAGGAGCTGCAAGTCCTGTCGTGCCACAAAGagtCCAACCAATGGCTGTTTCCTCTCGAACTCTGGTTTTAATAATGATCTCACAGGCGGTGTCCCTTTCAAACCAGAGTCAAGCCAAAACATGCTCAGTCCAAAGaagatttgattttattgcatgGACGGATGCTGCTTTGAAGGAAAACACACCTGTTAACagGAATTCCACGCAGGACAACTGCAAAGAGACTAGTGTTTTTCTTGGTATGTTTGATGGCCTTTTTTAGAGTTTCTGTAAAGGATTCCTGACACATTTAACAATACGTTGTGTGAGGATGTTCTTGGTTTAACACTGACTATTAATGATTTTGGCAAAGAGCTTTCTATCAATTTTGAAATAGCTGaactatattttgaaatgtaatgttttaaaaatattggaaAATTGCTCTGTAAATATCCCATGGAATTGTTCTTTTAGCGGTTAAGTTAGAGTAGTTTAACTTTAGATAAAAATACAAGTCTAGTATATGATGTGATATTTATATAGCTGTAATACACTTTAaattgtttggggtttttttgttttaagaatttATATATCTTCCAGAGACTcgtttttcccctctctcttttACATCCTCTGTTGATTAAAGAAGTTGTCTTGTGCTTGA

Function

symbol description
hfm1 Predicted to enable DNA helicase activity. Predicted to be involved in resolution of meiotic recombination intermediates. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 9. Orthologous to human HFM1 (helicase for meiosis 1).

NR:

description
probable ATP-dependent DNA helicase HFM1 isoform X1

GO: NA

KEGG:

id description
K15271 HFM1, MER3; ATP-dependent DNA helicase HFM1/MER3

RNA

RNA id representative length rna type GC content exon number start site end site
TU16111 False 251 lncRNA 0.42 2 10090101 10090451
TU16112 False 448 lncRNA 0.46 3 10090936 10092658
TU16114 False 389 lncRNA 0.50 2 10095217 10095702
XM_043256410.1 True 5161 mRNA 0.43 39 10080182 10095857

Neighbor

gene id symbol gene type direction distance location
sept2 sept2,LOC107722571,LOC107693718 coding downstream 8719 10062763 ~ 10071463 (-)
bokb bokb,LOC107693720,LOC107722584 coding downstream 26739 10049401 ~ 10053443 (-)
zgc:161973 LOC107722582,LOC107693721,LOC107718160,LOC107585707 coding downstream 34302 10040661 ~ 10045880 (-)
kif1ab kif1ab,LOC107722550,LOC107691514,LOC107693723,LOC108432503,LOC107589853 coding downstream 46884 10008346 ~ 10033298 (-)
espnlb espnlb,LOC107691737,LOC107722507,LOC107718163,LOC107580328,LOC107589891 coding downstream 72593 9997644 ~ 10007589 (-)
lrrc8da lrrc8d,lrrc8da,LOC107722644,LOC107585666,LOC107718115,LOC107691468,LOC107589846,LOC107722505 coding upstream 12274 10108131 ~ 10113585 (-)
hs2st1a hs2st1a,hs2st1,LOC107718112,LOC107589844,LOC107691454,LOC107722647,LOC107585633,LOC106598897 coding upstream 50725 10146582 ~ 10158021 (-)
tox tox,LOC107718108,LOC107722616,LOC107585594 coding upstream 127474 10223331 ~ 11062973 (-)
trnak-cuu_1 NA coding upstream 293694 10389551 ~ 10389623 (-)
LOC122359424 mplkip,LOC107722562,LOC107585495,LOC107688429,LOC107718104,LOC107689394,LOC107589834 coding upstream 333937 10429794 ~ 10433121 (-)
G10812 NA non-coding downstream 32809 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 152345 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 331442 9748387 ~ 9748740 (-)
G10621 NA non-coding downstream 473987 9605638 ~ 9606195 (-)
G10562 NA non-coding downstream 619098 9457163 ~ 9461084 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding upstream 62721 10158578 ~ 10160064 (-)
G10987 NA non-coding upstream 130361 10226218 ~ 10226856 (-)
G11057 NA non-coding upstream 570620 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 571785 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 573205 10669062 ~ 10669414 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other downstream 461709 9606323 ~ 9618473 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other downstream 560401 9491563 ~ 9519781 (-)
abca4b abca4,abca4b,LOC107564534,LOC107680047,LOC107745690 other downstream 870141 9182056 ~ 9210041 (-)
zfyve9a LOC107700554,LOC107563295,LOC107677579,LOC107553256,LOC107732202 other downstream 1652278 8403327 ~ 8427904 (-)
G10213 NA other downstream 1972394 8106856 ~ 8107788 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other upstream 24116 10119973 ~ 10139585 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other upstream 45078 10140935 ~ 10143709 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other upstream 218176 10314033 ~ 10320403 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other upstream 280206 10376063 ~ 10378211 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other upstream 296825 10392682 ~ 10421475 (-)

Expression


Co-expression Network