lyrm4 (lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520)


Basic Information

Item Value
gene id lyrm4
gene name lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10662729 ~ 10665110 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16293
ACTGAATCCAACATGGCGTCGTGCAGCAGGGCTCAGGTGATCTCTCTCTACAGGATGCTTATGAAAGAGAGTAAAAAATTCCCCTCGTATAGTTACAgAACATACGCACTTCGCAGAGTGAAAGATGGCTTCAGGGAGAACCTTCATGTGGACAACCCCAAAACTCTGGATATGCTCATAAATCAAGCTAGAGAGAATCTGGCGGTCATCAAGAGACAGGTTTCCATTGGCCATCTGTATTCTGCCCAGAAGCTAATTGTTGAAAAAGAgcctcatttataaatgtctgGTGGTTTGTTAATGACAAACCTGTTTATCCATGtttgtaaaattgtatattagagtgtattgtaaatgtatgtttatgttacattttgtagaaaataaataagatcTAATGAATGGCTAGAATATGATAATCActataaatagaaaaaacatacacaaacagctTACCTACATTTGAGCAACTCTTAAGTttgttttgaagctctgtaataCATACTAATGGAAATGCTAAACATGATGTGACGGTAGGCCTTTGTTTAAATGACTAAGACAATTGAGCATGCAACTACAAGTCAGgttcattttattgaattaaatttcAGCTTGTAAGTAGTCAGATACTAAATCCTTGGGTTATCAAGTAGTTTGAGTCCTTAAAGTGTAGTTCTGTCCGTCATTATTGTCCCAGTATTTCCCCTCTTCGGTTTGACAATACACTGCGAAATGCACCGATGAATCTTTGTCTAAACAGAAAGGCATGTACAAAATGAAGTCAAACTTTCCCCACTCCATCCCCTTTTCTTCATTCAGTCTTAACGCAGCTTGCACGTCCGTAAATGTCAGCCAGTTATTCAAAGTATACCTAACCCCAACCTCACTTGGGTTGCTCTGCATCGCTCTGATCACACCCTTCACTTCAGAAGCGGTTATTGTGACGCACTCCAGTGCGACTCCCAGGCGGCGGGACTTCATATCGAACTCCAGCGAGCTCACAGGCATTTCAAAGGCTGGCGCTAAACGCGCTGAAATCAGTTGCTGGTTTTGAGGTCGATTCCGGAGTCCAGATGTTTCGTCAGAGATGTCAAAATGTCTGACGCTTGCCAGGTTCAACCCCATCGTGTCCGCAAACTGGACTCTCTTTCCGCGGGCTGGATGTTCCTTGTGTGAGGAAGATTCATGCTGGTGTAGATCTGCAGGCAGAGATTTGGCTCTTTGCCTGTCGGTGTTTGGTGAATTAGGTGATGATGCTGCTTTAGACAGACGCTCGGTCTCATCTGAAGTTTGAGTGTCCTCTGACTGCTCTGTGTCCATGGGTTTTCATCATATTGTCCAGCTAGTAAATGAGGAGCGGACGATCTTTTAAATATAGGAACTGGAGCTGCAGTCGTT
>TU16295
ACTGAATCCAACATGGCGTCGTGCAGCAGGGCTCAGGTGATCTCTCTCTACAGGATGCTTATGAAAGAGAGTAAAAAATTCCCCTCGTATAGTTACAgAACATACGCACTTCGCAGAGTGAAAGATGGCTTCAGGGAGAACCTTCATGTGGACAACCCCAAAACTCTGGATATGCTCATAAATCAAGCTAGAGAGAATCTGGCGGTCATCAAGAGACAGGTTTCCATTGGCCATCTGTATTCTGCCCAGAAGCTAATTGTTGAAAAAGAgcctcatttataaatgtctgGTGGTTTGTTAATGACAAACCTGTTTATCCATGtttgtaaaattgtatattagagtgtattgtaaatgtatgtttatgttacattttgtagaaaataaataagatcTAATGA
>XM_043259781.1
atggtgacccaaaacagcacGGTTGCAAACTTTTATCGGaacatcttcctttgtgttcgccagaacaaagaaattcacacagatttggaactacaagggtgagtaaaagatgacagaattgtaatgtATGTCCTACTGTATGTTAGACCCAGTGGTCTCTGAGgtctgttatgtttttttttgtgtgtgtgatgatgatccAGTCATTGAAAGAGGCCCCATATGCCAACAGTCGGCCATGATGCGGCCCCAGGGATCTTCTGTGGTCTCCCCAGGCACAACACTACTGTGGACATGAATTTCTCCTAATGTGATGCTAACTCTTCCTGTATAGCGCTcataaaagaaatggaaaaattaaGAGAGCGCCTCCAGTGACTTGCAAATCCATTTTAGCATAAAACCTGGAAGAACGAAACACTACAATGGGTAATCAATTTGCAGAAATGTCCCGAAATGTACTAGTAGGCTGCTAAGATGGCATTTGCCTCTTTATTGTAGGAATGCACGTCGTGCTTTATATTCCGCGGCCATCTGCTCAGCGGATCCTGACGCTAGAGGGCGATGTATCACACGCGACCCAACGCAACGCGAGAAGAACCGCACTGAATCCAACATGGCGTCGTGCAGCAGGGCTCAGGTGATCTCTCTCTACAGGATGCTTATGAAAGAGAGTAAAAAATTCCCCTCGTATAGTTACAgAACATACGCACTTCGCAGAGTGAAAGATGGCTTCAGGGAGAACCTTCATGTGGACAACCCCAAAACTCTGGATATGCTCATAAATCAAGCTAGAGAGAATCTGGCGGTCATCAAGAGACAGGTTTCCATTGGCCATCTGTATTCTGCCCAGAAGCTAATTGTTGAAAAAGAgcctcatttataaatgtctgGTGGTTTGTTAATGACAAACCTGTTTATCCATGtttgtaaaattgtatattagagtgtattgtaaatgtatgtttatgttacattttgtagaaaataaataagatcTAATGAA

Function

symbol description
lyrm4 Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 19. Orthologous to human LYRM4 (LYR motif containing 4).

NR:

description
LYR motif-containing protein 4A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16293 True 1398 lncRNA 0.55 3 10663333 10665110
TU16295 False 401 lncRNA 0.39 3 10663333 10664113
XM_043259781.1 False 1006 mRNA 0.42 3 10662729 10664114

Neighbor

gene id symbol gene type direction distance location
nrn1b nrn1b,LOC107722529,LOC107688533,LOC107589820 coding upstream 2268 10658601 ~ 10660461 (+)
nebl nebl,LOC107722518,LOC107688530,LOC107718172,LOC107689428 coding upstream 46433 10611990 ~ 10616296 (+)
bmi1b bmi1b,LOC107585379,LOC107688441,LOC107689401 coding upstream 72269 10584873 ~ 10590460 (+)
klhl40a klhl40a,LOC107722643,LOC107688437,LOC107586696,LOC107718175,LOC107689425 coding upstream 128619 10530608 ~ 10534110 (+)
hhatla hhatl,LOC107688529,LOC107722653,LOC107689424,LOC107718176 coding upstream 133810 10522361 ~ 10528919 (+)
rpp40 rpp40,LOC107688445,LOC107722637,LOC107689405 coding downstream 795 10665905 ~ 10671812 (+)
oxsr1a oxsr1a,LOC107718088,LOC107589819,LOC107722611,LOC107585310,LOC107689410,LOC107688448 coding downstream 27400 10692510 ~ 10702785 (+)
slc22a13a LOC107722499 coding downstream 38136 10703246 ~ 10706943 (+)
csrnp1a LOC107722574,LOC107585280,LOC107689421,LOC107589814,LOC107718084,LOC107683225,LOC107688521 coding downstream 68806 10733916 ~ 10741971 (+)
gorasp1a LOC107688453,LOC107722575,LOC107585269,LOC107689416,LOC107589815,LOC107718085 coding downstream 77375 10742485 ~ 10748341 (+)
LOC122359526 NA non-coding upstream 93721 10567881 ~ 10569008 (+)
G10901 NA non-coding upstream 122739 10421937 ~ 10539990 (+)
G10914 afg3l2,LOC107718155,LOC107688430,LOC107589831 non-coding upstream 179777 10445181 ~ 10482952 (+)
G10918 inhbab,LOC107718177,LOC107589832 non-coding upstream 187446 10470121 ~ 10475283 (+)
G10903 NA non-coding upstream 269579 10392693 ~ 10393150 (+)
G11077 NA non-coding downstream 92946 10758056 ~ 10831642 (+)
LOC122359515 NA non-coding downstream 155001 10820111 ~ 10822197 (+)
G11106 NA non-coding downstream 231573 10896683 ~ 10897497 (+)
G11117 NA non-coding downstream 287940 10953050 ~ 10978280 (+)
G11133 NA non-coding downstream 491428 11156538 ~ 11157341 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 500920 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 745868 9911628 ~ 9916861 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other upstream 911517 9746570 ~ 9751212 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other upstream 1490814 9162611 ~ 9171915 (+)
G10212 NA other upstream 2554952 8106865 ~ 8107777 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other downstream 46020 10711130 ~ 10718194 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other downstream 454744 11119854 ~ 11135991 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other downstream 564650 11229760 ~ 11264234 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 638568 11303678 ~ 11338469 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other downstream 674625 11339735 ~ 11341111 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07254370_07254880 LYRM4 misc CI01000004 null 7254370 ~ 7255602 (+)
eurasian perch (Perca fluviatilis) G23759 NA non-coding NC_053113.1 CM020910.1 43823067 ~ 43823415 (-)
bowfin (Amia calva) G25588 NA non-coding CM030123.1 CM030123.1 26313363 ~ 26313565 (+)