ca8 (ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484)


Basic Information

Item Value
gene id ca8
gene name ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10314033 ~ 10320403 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16322
TTTCTATGGTGCTACATCAGAGGCTTAGGCCAATCACATGGCTCGTGGGGGACCGTGTGGGCTGTAGTAGCTAAGAGAGTAAGTTTGTGAATTTACTTTTGTTTGGTACAGAGAAGACAACTTTCCTAGGAGAGCGCAGGAGAAGAAAACTCATCACTTTCGATGGAATGACGACTGGTTCCTGTTGGCTGCAGTCTCAGCGTGGACACTGAGTCTTTGAAGCTATTGAGTTTAGTCACTTCCACTTGTATTGCTGTAGAACACTTTCTTCATGTTTTATGGGAGGGAAGTGAGCAAGCGACGAGGAAGAATTCACCCTGAAAACAGGGTCAGAAAGAAGTAGTTTTTTTGGAACCTGCTCAGGACAGAACGAAAGTTGTAGAGAGAAAACTCAGTTGCTATGGCAGATAATGTTATAGAGGAGACCGATAACTACCCTGGCAAAGATGAGCTGGACTGGGGCTATGAAGAAGGTGTTGAATGGGGTCTTCTGTTTCCTGAGGCAAATGGAGAGTACCAGTCTCCCATAAACCTTAACTCTAGGGAGGCCCGCT
>XM_043255291.1
GTGGCCTGACTGTAAACCAGGGCCAGACTGCTGAGCTGTTTCTATGGTGCTACATCAGAGGCTTAGGCCAATCACATGGCTCGTGGGGGACCGTGTGGGCTGTAGTAGCTAAGAGAGTAAGTTTGTGAATTTACTTTTGTTTGGTACAGAGAAGACAACTTTCCTAGGAGAGCGCAGGAGAAGAAAACTCATCACTTTCGATGGAATGACGACTGGTTCCTGTTGGCTGCAGTCTCAGCGTGGACACTGAGTCTTTGAAGCTATTGAGTTTAGTCACTTCCACTTGTATTGCTGTAGAACACTTTCTTCATGTTTTATGGGAGGGAAGTGAGCAAGCGACGAGGAAGAATTCACCCTGAAAACAGGGTCAGAAAGAAGTAGTTTTTTTGGAACCTGCTCAGGACAGAACGAAAGTTGTAGAGAGAAAACTCAGTTGCTATGGCAGATAATGTTATAGAGGAGACCGATAACTACCCTGGCAAAGATGAGCTGGACTGGGGCTATGAAGAAGGTGTTGAATGGGGTCTTCTGTTTCCTGAGGCAAATGGAGAGTACCAGTCTCCCATAAACCTTAACTCTAGGGAGGCCCGCTGGCATCCACTGCTTCTGGAGGTGGGGCTTAACCCCAACTATGTCGTTTGCAGGGACTGTGAAGTCATTAACGACGGTCATACTGTGAGGATCATGCTCAAGTCCAAATCAGGTATAACATGCTGAACATTCACTAAAAATGATCcttctgccattatttacttTCTGCCTTCAGTGCGCTTCCACTGGGGCaaagagaaccagaggggatcTGAGCACACTGTCAACTTCAAGGCTTTTCCTATGGAGCTTCATCTCATCCACTGGAACTCTACATTATTCAACAGCGTGGAGGAGGCCATGGGCAAGAAAAAAGGCATCCTTATCATCGCCCTGTTTGTGCAGATTGGGAAGGAACACCTTGGGCTGAAGGCCATCACAGACGTCCTGCAGGACTTGCAGTATAAGggaaagacaaaaataattccATGTTTTAACCCCAACACGTTACTGCCTGATCCTCTCTTAAGAGATTACTGGGTGTATGAGGGCTCTTTAACCACACCGCCCTGTAGTGAGAACGTCACCTGGATTCTTTACAGTTACCCGCTTACCATCTCTCAGATGCAGTTAATTTTGGGCCCCGCTCACATGCACCCCTCCACTGTAGTGCACAGATTGAAAGAGTTTCATCGTCTCAGGTCCCATATTAAAGGAGCAGAGCTTCCAGAAGGCAATGATGGGATGCTGGGGACAACTTCAGACCCACCCAGCCCCTGA

Function

symbol description
ca8 Predicted to enable hydro-lyase activity. Acts upstream of or within cerebellum development; chordate embryonic development; and swimming behavior. Is expressed in several structures, including brain; digestive system; hatching gland; hindbrain neural plate; and pleuroperitoneal region. Used to study cerebellar ataxia, mental retardation and dysequlibrium syndrome. Human ortholog(s) of this gene implicated in cerebellar ataxia, mental retardation and dysequlibrium syndrome. Orthologous to human CA8 (carbonic anhydrase 8).

NR:

description
PREDICTED: carbonic anhydrase-related protein

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0036269 swimming behavior biological_process
GO:0009790 embryo development biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16322 False 554 lncRNA 0.37 2 10318984 10320365
XM_043255291.1 True 1311 mRNA 0.48 11 10314033 10320403

Neighbor

gene id symbol gene type direction distance location
hs2st1a hs2st1a,hs2st1,LOC107718112,LOC107589844,LOC107691454,LOC107722647,LOC107585633,LOC106598897 coding downstream 156012 10146582 ~ 10158021 (-)
lrrc8da lrrc8d,lrrc8da,LOC107722644,LOC107585666,LOC107718115,LOC107691468,LOC107589846,LOC107722505 coding downstream 200448 10108131 ~ 10113585 (-)
sept2 sept2,LOC107722571,LOC107693718 coding downstream 242570 10062763 ~ 10071463 (-)
bokb bokb,LOC107693720,LOC107722584 coding downstream 260590 10049401 ~ 10053443 (-)
zgc:161973 LOC107722582,LOC107693721,LOC107718160,LOC107585707 coding downstream 268153 10040661 ~ 10045880 (-)
trnak-cuu_1 NA coding upstream 69148 10389551 ~ 10389623 (-)
LOC122359424 mplkip,LOC107722562,LOC107585495,LOC107688429,LOC107718104,LOC107689394,LOC107589834 coding upstream 109391 10429794 ~ 10433121 (-)
inhbab inhbab,LOC107718177,LOC107589832 coding upstream 144906 10465309 ~ 10476229 (-)
afg3l2 afg3l2,LOC107589831,LOC107689395,LOC107688430,LOC107585478,LOC108435493 coding upstream 161267 10481670 ~ 10489280 (-)
ctdsplb ctdsplb,LOC107722544,LOC107688434,LOC107585460,LOC107589830,LOC107689397,LOC108435491,LOC108280637 coding upstream 186920 10507323 ~ 10520967 (-)
G10987 NA non-coding downstream 87177 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 153969 10158578 ~ 10160064 (-)
G10812 NA non-coding downstream 266660 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 386196 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 565293 9748387 ~ 9748740 (-)
G11057 NA non-coding upstream 346074 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 347239 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 348659 10669062 ~ 10669414 (-)
G11097 NA non-coding upstream 425632 10746035 ~ 10817620 (-)
G11096 LOC107688453,LOC107585269,LOC107722575 non-coding upstream 426138 10746541 ~ 10819202 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 170324 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 174448 10119973 ~ 10139585 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other downstream 218176 10080182 ~ 10095857 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other downstream 695560 9606323 ~ 9618473 (-)
plppr5a plppr5,plppr5a,LOC107722655,LOC107693754,LOC107677753,LOC107589876,LOC108441579,LOC107718169 other downstream 794252 9491563 ~ 9519781 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other upstream 55660 10376063 ~ 10378211 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other upstream 72279 10392682 ~ 10421475 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other upstream 437625 10758028 ~ 10764891 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other upstream 447571 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other upstream 480313 10800716 ~ 10803288 (-)

Expression


Co-expression Network