G11011 (chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390)


Basic Information

Item Value
gene id G11011
gene name chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10376063 ~ 10378211 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16347
TAGGCGAATATTGTGAGtcacttttattaaaagcatcATTTCTACAGTTGGCAGCAATTTACAGTTCATCATACATGatggtttcaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaacatttacaacatttaTGTCTGTAAACTTCAAGGCTAGTTAGAATTGAGGTAATGCTGTTCAGCTTTGTGGCTAAAGTAACAAAAGTCCATTCAAATAGATAAAAGGTACCTGATTTTATTCTTACACCAGTGCATTAACATGGATACAATGAGACAATTTGACTGCAGTAATTTATTTCATGTCGTTTTTTCCACACTTTCCGGTGTTTAGTCAAAAGAGTAAAATTGAACATTCAAAAGCTGCCTTCGTTATTGCTGTCTCCACAGGTCGAGAGGTCTCCTCACCCGTTTGGATTGTCAGTGTGAGAGACTGGGAACAGTCCAAGTGTAGGCTATGATATGTGAGAACTTTGCCCGCTCCTCTTAGCAGAACAGTACAACGAAAACCACGATTCTTCCTCAGCAGCGGAGAGTGTCTTAATGCCGTTAAATTGTACATCACTGAATATTACGAGATGCTACTCATTGTTACAATATCaacagcagagagagacagagagaaaaaaaaaagtgacaacaaaacaaaacaataatattaaaataaggaGAGCAGCATAGCACTATCGGAACGATTAATTCCTATAATATTTCAGGAAATTTCCACCTCATCTAGAAGGCACCCACACAGTGCCAAAGACTTCAAgggaaaaatttttttaaacaaaaagtaaagaaaacacaagggaaaaaaaaaaccaaaaacaaaaaaacacaccctTTTGACATCCGCACAACTGTTCAGGTCATCCCCGGCTATGCTAATGGTTACAGAGACAGCTTATTCGCTTTCCTCTTAACGTTACCTGTCAACAAAAACCAAACGACCAAAGTGTTTTGGATATTGAGTTGGCATGTAAACAACTGGACTAACCATTCTGTCAGAGTTCAGTCTGCGTCACAGCCCTGGGGAAGTGTTAGAAGGCTCGATTCAGTTTTTTTAGTCACTTTTGTCATCCTCATCAGCAGGgtcatcatcctcctcatcatcatcatcgtcatcatcctcatcatccatTCCACCCTCCATGGAGTCCATTTCCTCTGCCGGCCCTGCCAGGTCATCATCTAGTACTGATGAATCAGCAGTCTTGTTCTGGCTCTCCTCTGAGTCACTGTCTTCAAGTGTGTTGTCAGCAGTTTCCACGTCAGCCATGGAGGCGTTCTGGTCCTGATTTGAGCGAAGCCCTTTACCAGACTCCTTGTCCTCTCCGGTGGCCCCTAAAGCCCCAGACACAGCATTCTGGAGATCAGCTAGAGAAGCTTGGGGGAAGCCAGGGATGCCCAAGCCGCCAAGACTGGGGGGTAAGAACATAGATGGGTAGAAGAGGCCTGGGGCCATGGTGGAGAGCAGGAAAGGGTTGAAGGCCAGAGCAGCGTTGGTGGACATGCCTGCGGAGGCAGCAGCGGCAGCAGCAGCGGCTGCTGCATTCAGTGTGGCGGTGTCACTGGTTACCTCAGCAGACTCTGTTTCAGATGATTTCTCTGCTTCCTTCTCCTCTTTATCATCTCCTTCATCCTTGGTCTCCTCGTCTACCTTCGGCTTGGGATTCTCATCAGATTCTGCCTGTTCTGTACTAGAGGCACCGTTGGTGGCCGTCGCAGCAGCAGCCAGGTTTCCTCCAAACAGACCCCCCAGGCTGAACATGTTGGGGAGGCCACCCATGCCAGGAAGCATGAGAGGCAGCATGGCTGCGGCATGCTTGGCATCCGCTCCCCCTCCGAGAGCAGGGGGAAATCCCATGAGGCCAGCGGCCAGCTGGAGGCTCTGGAGGTTCTGCAGACCCTGCAGACTGGTCAGGTCCATGCCACCAAACAGCCCGTTCATCAGCAGAGGATTAACGCCGGACGTGGAGGCTGCTGCTGCCGCAGCCGCTGcctgtgctgctgctgttgcctTGGCAATCTCAGATTTGGGTCGCCTGCCTCTGCGGCGCACACCCTCTTCTCTGACTACTGGCCCAGTCAGAAGACGGTCAAACATAGACTCTGGGAG

Function

symbol description
chd7 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Involved in myelination and neuron development. Acts upstream of or within several processes, including animal organ development; nervous system development; and rRNA transcription. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; digestive system; gonad; musculature system; and somite. Used to study CHARGE syndrome. Human ortholog(s) of this gene implicated in CHARGE syndrome; hypogonadotropic hypogonadism 5 with or without anosmia; and idiopathic scoliosis. Orthologous to human CHD7 (chromodomain helicase DNA binding protein 7).

NR:

description
PREDICTED: chromodomain-helicase-DNA-binding protein 7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16347 True 2113 TUCP 0.47 2 10376063 10378211

Neighbor

gene id symbol gene type direction distance location
hs2st1a hs2st1a,hs2st1,LOC107718112,LOC107589844,LOC107691454,LOC107722647,LOC107585633,LOC106598897 coding downstream 218042 10146582 ~ 10158021 (-)
lrrc8da lrrc8d,lrrc8da,LOC107722644,LOC107585666,LOC107718115,LOC107691468,LOC107589846,LOC107722505 coding downstream 262478 10108131 ~ 10113585 (-)
sept2 sept2,LOC107722571,LOC107693718 coding downstream 304600 10062763 ~ 10071463 (-)
bokb bokb,LOC107693720,LOC107722584 coding downstream 322620 10049401 ~ 10053443 (-)
zgc:161973 LOC107722582,LOC107693721,LOC107718160,LOC107585707 coding downstream 330183 10040661 ~ 10045880 (-)
trnak-cuu_1 NA coding upstream 11340 10389551 ~ 10389623 (-)
LOC122359424 mplkip,LOC107722562,LOC107585495,LOC107688429,LOC107718104,LOC107689394,LOC107589834 coding upstream 51583 10429794 ~ 10433121 (-)
inhbab inhbab,LOC107718177,LOC107589832 coding upstream 87098 10465309 ~ 10476229 (-)
afg3l2 afg3l2,LOC107589831,LOC107689395,LOC107688430,LOC107585478,LOC108435493 coding upstream 103459 10481670 ~ 10489280 (-)
ctdsplb ctdsplb,LOC107722544,LOC107688434,LOC107585460,LOC107589830,LOC107689397,LOC108435491,LOC108280637 coding upstream 129112 10507323 ~ 10520967 (-)
G10987 NA non-coding downstream 149207 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 215999 10158578 ~ 10160064 (-)
G10812 NA non-coding downstream 328690 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 448226 9926105 ~ 9927837 (-)
G10708 NA non-coding downstream 627323 9748387 ~ 9748740 (-)
G11057 NA non-coding upstream 288266 10666477 ~ 10666712 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding upstream 289431 10667642 ~ 10668967 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 290851 10669062 ~ 10669414 (-)
G11097 NA non-coding upstream 367824 10746035 ~ 10817620 (-)
G11096 LOC107688453,LOC107585269,LOC107722575 non-coding upstream 368330 10746541 ~ 10819202 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 55660 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 232354 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 236478 10119973 ~ 10139585 (-)
hfm1 hfm1,LOC107722645,LOC107586144 other downstream 280206 10080182 ~ 10095857 (-)
si:ch211-267e7.3 si:ch211-267e7.3,LOC107722581,LOC107594654,LOC107718186,LOC107589917,LOC107677774,LOC107693699 other downstream 757590 9606323 ~ 9618473 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other upstream 14471 10392682 ~ 10421475 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other upstream 379817 10758028 ~ 10764891 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other upstream 389763 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other upstream 422505 10800716 ~ 10803288 (-)
LOC122359462 NA other upstream 519338 10897549 ~ 10902625 (-)

Expression


Co-expression Network