G11064 (rpp40,LOC107722637,LOC107688445,LOC107689405)


Basic Information

Item Value
gene id G11064
gene name rpp40,LOC107722637,LOC107688445,LOC107689405
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10667642 ~ 10668967 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16424
TGATGTCTAGGTTAACCGCTCCAAGCCACTCCAAGAAGTGATGTGGGTCACATGACAGTGTCTTTCCCTGTATATCTGATGGGTAAAGTGTGGGACATGGCATATTTTTCAGGGTGTGATGGCTTAAAGCAGGCTTGTGCTCCTCGTAAGAGTACTGGGACAACAGCTTGTTCAGAGTCAGATCTTCATCTGAACCTGAAAAATTCAGAAATACAAAAGGCTAaggcaatttaaaaatgtgtttgttgaaGTCAGCGATGATAACGATGGATTACTTAAGACAAACCTGTCTTGTATTTAgttaaaagaaagtcatatttgaGTGGTAGTCTGTCCTTCAAGCTTGAGAGAACCCGCTGGTATCGTTTAGTGCCTGGGTTCAAGCTTTTATCAGTGAGATCCAGAGTCACCA
>TU16425
GGCGCAGTCCGATAGATTTACTCATTACGATTGGTTCTCTTGTATCAGTAGCCAATGAGCTCACTCAACACTGAAATACTTGGCTAATGCCTGCGCAttaaaccctccaccttccccagctccacctgtatagttCTGCGTCTGGGTTATTCAAGTTATATAGGTACAGCAGCTGTATAACTAAATGCCCACAGCTGTAGTGCTGGGTACATTTCGATACCTAAGGGGTTAATCTCATCGACGTGCGATTTCCGTGACCGGAAATGGCACGACGCAGATTGCCACCCACGAGGGCGATGCACGGATCAGTCTGTGTAAACTAGGCGTTTTCTACGGGAAACCAAACCCAAATGCAGGACGAAACAGCGCAGTATTAAAAGGAGTTTGCATTTTAGTGCATTCaatgaatgattttaaataaaatcttgtttAACGCACTAGTGTTAAAACTGgaatcaattattttatatgtgctTTAAGGCACATAGTCCTCTCTCAAATTACAAGACAGAACTTGCTTACTTATAGTTGTCTTTGCATAATTAATTGGAATACAGTAGGTGACAGTAATGCTGGGCTCTCACCTGAGTTCCTGCagcagcacaaacacattctCAGGTGAGATGAAGCCAGTGACGGTGAACAGCAGGGCCTGACTGACAGAGCTCTGGGGCTCTGGACACGCATATGTTGACACGAAACTATCAGCAGCATTTTCACTGAAAACATTGAGAAATACAGTCAAACTCTCCCAGAAATCCAAAGGCAGTTTCAGTTGTCCCTGTGCCATAATCAAGTATTAATTGTACAACAATATAAATGGAACCAATTCGTGTATTTAGCAGATGACAATCATGTAAGAGCACTGCATGATACAGCTTTAGTGAATTTAACACTTCATCTCACTTACCAGCTGATGTCTAGGTTAACCGCTCCAAGCCACTCCAAGAAGTGATGTGGGTCACATGACAGTGTCTTTCCCTGTATATCTGATGGGTAAAGTGTGGGACATGGCATATTTTTCAGGGTGTGATGGCTTAAAGCAGGCTTGTGCTCCTCGTAAGAGTACTGGGACAACAGCTTGTTCAGAGTCAGATCTTCATCTGAACCTGAAAAATTCAGAAATACAAAAGGCTAaggcaatttaaaaatgt
>TU16426
AGATGACAATCATGTAAGAGCACTGCATGATACAGCTTTAGTGAATTTAACACTTCATCTCACTTACCAGCTGATGTCTAGGTTAACCGCTCCAAGCCACTCCAAGAAGTGATGTGGGTCACATGACAGTGTCTTTCCCTGTATATCTGATGGGTAAAGTGTGGGACATGGCATATTTTTCAGGGTGTGATGGCTTAAAGCAGGCTTGTGCTCCTCGTAAGAGTACTGGGACAACAGCTTGTTCAGAGTCAGATCTTCATCTGAACCTGAAAAATTCAGAAATACAAAAGGCTAaggcaatttaaaaatgt

Function

symbol description
rpp40 Predicted to contribute to ribonuclease MRP activity and ribonuclease P activity. Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); endonucleolytic cleavage involved in tRNA processing; and tRNA 5'-leader removal. Predicted to be part of multimeric ribonuclease P complex and ribonuclease MRP complex. Orthologous to human RPP40 (ribonuclease P/MRP subunit p40).

NR:

description
PREDICTED: ribonuclease P protein subunit p40-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16424 False 412 lncRNA 0.43 1 10667642 10668053
TU16425 True 1154 lncRNA 0.43 1 10667814 10668967
TU16426 False 311 lncRNA 0.42 1 10667814 10668124

Neighbor

gene id symbol gene type direction distance location
LOC122359387 LOC107688520 coding downstream 2572 10664288 ~ 10665070 (-)
rreb1b rreb1,LOC107722578,LOC107718094,LOC107689404,LOC107589881 coding downstream 11793 10625072 ~ 10655849 (-)
riok1 riok1,LOC107689403,LOC107589821,LOC102776549,LOC107688531 coding downstream 42898 10616301 ~ 10624744 (-)
pip4k2ab pip4k2ab,LOC107585365,LOC107688442,LOC107718096,LOC107689402,LOC107722628,LOC103035282,LOC108444221 coding downstream 56907 10592212 ~ 10610735 (-)
dnajc1 dnajc1,LOC107718098,LOC107585399,LOC107722591,LOC107688438 coding downstream 87020 10575252 ~ 10580622 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding upstream 503 10669470 ~ 10684655 (-)
xirp1 LOC107722568,LOC107688450,LOC107585289,LOC107689412,LOC107718087,LOC107589818 coding upstream 41998 10710965 ~ 10726846 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding upstream 195104 10864071 ~ 10889273 (-)
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 486295 11155262 ~ 11159313 (-)
slc12a7a LOC107722598,LOC107585218,LOC107589906,LOC107718080,LOC107688522 coding upstream 537477 11206444 ~ 11227249 (-)
G11057 NA non-coding downstream 930 10666477 ~ 10666712 (-)
G10987 NA non-coding downstream 440786 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 507578 10158578 ~ 10160064 (-)
G10812 NA non-coding downstream 620269 10046818 ~ 10047373 (-)
G10773 NA non-coding downstream 739805 9926105 ~ 9927837 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding upstream 95 10669062 ~ 10669414 (-)
G11097 NA non-coding upstream 77068 10746035 ~ 10817620 (-)
G11096 LOC107688453,LOC107585269,LOC107722575 non-coding upstream 77574 10746541 ~ 10819202 (-)
G11103 NA non-coding upstream 87622 10756589 ~ 10828152 (-)
G11101 NA non-coding upstream 88223 10757190 ~ 10829289 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 246167 10392682 ~ 10421475 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other downstream 289431 10376063 ~ 10378211 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 347239 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 523933 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 528057 10119973 ~ 10139585 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other upstream 89061 10758028 ~ 10764891 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other upstream 99007 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other upstream 131749 10800716 ~ 10803288 (-)
LOC122359462 NA other upstream 228582 10897549 ~ 10902625 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 666751 11335718 ~ 11339611 (-)

Expression


Co-expression Network