LOC122359216 (tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415)


Basic Information

Item Value
gene id LOC122359216
gene name tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10767974 ~ 10861595 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16478
AAAAAAACTGACCAGTCCTAAAGAATGATCTCTACCACGATGGACGTGGGAACGTTACTTAGCCGCTCGATTCTGCTGGCTTTGCTCGTATTCACGGCGACCCAGGAGGCGCGAGGATTGCTGTGTTTTTGCGAGCGATGTGTAAATCGGACATGCAACACGACTGGCCTGTGTTTTGCTGTCATTGCAAAGTCTGCCGGACAGTTTGTGACACAGGAAAGCCAGTGCATTCAGCAGGATGATCTTTACCCTCGGGACAGGCCTTTCCAGTGCGCCCCCTCCAACAACGGCAAGCATCCGTACTGCTGTGACACACACATGTGCAACAAGAACCCAAAGGTCAACCCAGAATTGCCTGATACTGGACCCCAGTCTCTGAGTCCCATAGCCTTAGCCGCGGTGATTGCCATCCCCATCTGCGTACTGAGCTGCATGCTGGTGCTGCTCTTTTACATGTGCCATAATCGCTCCATCATCCACCATCGTGTGCCAAGTGAGGAAGACCCCACTATGGACCACCCATTCCTCGCTGACGGCACCACGCTGAAGGACCTCATCTATGACATGACCACTTCTGGATCAGGCTCAGGTTTGCCGCTGCTAGTGCAGAGGACCATTGCCAGAACCATCATCCTCCAGGAGAGTATAGGGAAAGGCCG
>TU16480
AAGAATGATCTCTACCACGATGGACGTGGGAACGTTACTTAGCCGCTCGATTCTGCTGGCTTTGCTCGTATTCACGGCGACCCAGGAGGCGCGAGGATTGCTGTGTTTTTGCGAGCGATGTGTAAATCGGACATGCAACACGACTGGCCTGTGTTTTGCTGTCATTGCAAAGTCTGCCGGACAGTTTGTGACACAGGAAAGCCAGTGCATTCAGCAGGATGATCTTTACCCTCGGGACAGGCCTTTCCAGTGCGCCCCTCCAACAACGGCAAGCATCCGTACTGCTGTGACACACACATGTGCAACAAGAACCCAAAGGTCAACCCAGAATTGCCTGATACTGGACCCCAGTCTCTGAGTCCCATAGCCTTAGCCGCGGTGATTGCCATCCCCATCTGCGTACTGAGCTGCATGCTGGTGCTGCTCTTTTACATGTGCCATAATCGCTCCATCATCCACCATCGTGTGCCAAGTGAGGAAGACCCCACTATGGACCACCCATTCCTCGCTGACGGCACCACGCTGAAGGACCTCATCTATGACATGACCACTTCTGGATCAGGCTCAGGTTTGCCGCTGCTAGTGCAGAGGACCATTGCCAGAACCATCATCCTCCAGGAGAGTATAGGGAAAGGCCGTTTTGGAGAGGTGTGGAGGGGCCGCTGGCGTGGAGAGGAGGTGGCAGTGAAGATCTTCTCCTCTAGAGAGGAGCGATCTTGGTTCCGTGAGGCAGAGATCTACCAGACTGTCATGCTTCGTCATGAGAACATCCTGGGCTTTATTGCTGCAGACAACAAAGATAACGGCACATGGACTCAGCTGTGGCTGGTTTCTGATTACCATGAGCACGGCTCGCTCTTTGACTACCTGAACAGGTACACGGTCACAGTAGAGGGCATGATCAAGCTGTCCCTTTCCACCGCCAGCGGTCTGGCTCATCTACATATGGAGATTGTGGGCACTCAGGGTAAGCCTGCAATTGCCCATCGTGATCTGAAATCTAAAAACATCTTGGTGAAGAAGAATGGTACGTGCTGCATTGCTGACCTTGGATTGGCTG
>XM_043259526.1
CGACTACTTGAAtgtatgagaaaaaaaactgaccagTCCTAAAGAATGATCTCTACCACGATGGACGTGGGAACGTTACTTAGCCGCTCGATTCTGCTGGCTTTGCTCGTATTCACGGCGACCCAGGAGGCGCGAGGATTGCTGTGTTTTTGCGAGCGATGTGTAAATCGGACATGCAACACGACTGGCCTGTGTTTTGCTGTCATTGCAAAGTCTGCCGGACAGTTTGTGACACAGGAAAGCCAGTGCATTCAGCAGGATGATCTTTACCCTCGGGACAGGCCTTTCCAGTGCCCCTCCAACAACGGCAAGCATCCGTACTGCTGTGACACACACATGTGCAACAAGAACCCAAAGGTCAACCCAGAATTGCCTGATACTGGACCCCAGTCTCTGAGTCCCATAGCCTTAGCCGCGGTGATTGCCATCCCCATCTGCGTACTGAGCTGCATGCTGGTGCTGCTCTTTTACATGTGCCATAATCGCTCCATCATCCACCATCGTGTGCCAAGTGAGGAAGACCCCACTATGGACCACCCATTCCTCGCTGACGGCACCACGCTGAAGGACCTCATCTATGACATGACCACTTCTGGATCAGGCTCAGGTTTGCCGCTGCTAGTGCAGAGGACCATTGCCAGAACCATCATCCTCCAGGAGAGTATAGGGAAAGGCCGTTTTGGAGAGGTGTGGAGGGGCCGCTGGCGTGGAGAGGAGGTGGCAGTGAAGATCTTCTCCTCCAGAGAGGAGCGATCTTGGTTCCGTGAGGCAGAGATCTACCAGACTGTCATGCTTCGTCATGAGAACATCCTGGGCTTTATTGCTGCAGACAACAAAGATAACGGCACATGGACTCAGCTGTGGCTGGTTTCTGATTACCATGAGCACGGCTCGCTCTTTGACTACCTGAACAGGTACACGGTCACAGTAGAGGGCATGATCAAGCTGTCCCTTTCCACCGCCAGCGGTCTGGCTCATCTACATATGGAGATTGTGGGCACTCAGGGTAAGCCTGCAATTGCCCATCGTGATCTGAAATCTAAAAACATCTTGGTGAAGAAGAATGGTACGTGCTGCATTGCTGACCTTGGATTGGCTGTGCGCCACGACTCGGCCACAGACACAATTGATATTGCACCCAACCACAGAGTGGGCACTAAAAGGTATATGGCCCCTGAGGTGCTGGATGACTCCATTAACATGAAGCACTTTGAGTCTTTTAAAAGGGCTGACATCTATGCCTTGGGTCTGGTGTTTTGGGAAATTGCTCGCAGATGTTCAGTTGGAGGCATCCATGAGGACTACCAGCTGCCTTACTATGACCTTGTACCATCTGATCCGTCTATAGAGGACATGAAGAGGGTAGTGTGTGACCAAAAGCTTCGTGCCAACATCCCTAACAGGTGGCAGAGCTGCGAGGCCCTGCGCGTGATGGCAAAGATCATGAGGGAATGCTGGTACGCCAACGGAGGCGCTCGCCTCACTGCGCTTCGAGTGAAAAAGTCTCTGTCTCAGCTATGTCAACAAGAAGGCATCAAGATCTAGAGCAAAACTCTCCTCATCTTTACACTGCCTATTCACTCCCTCCACTCATCTAGAGAGGACAGCGGGGGAATATCGAGGGACCAGAAAGGATTGGTGCTGTTTCACTGTTGTCCATAAACGGATACCTCCTCATCGTGCAAGAACACCTCAGACAAACTTTACCAGCCATGCTTCATCTGGTGAGTCACCACCATACATCAACCACAGATGGCCATTCGTTGCGATAGATGTGGACTTGAGCCTTTTGGACTTGTTTCTGTATATAGCCCGTTGTCTATAGATGTACATATCTGCAGTCTTCGTCCCAGGAAATGCCCCTGTTCTGAAACACTCGTGTTTACCACATTTGGTGGAAAAGGATCTTTGTAGGTATCAAGTCACTACATCTCTTTACATCCCACATCGGATTTAAA

Function

symbol description
tgfbr1a Predicted to enable SMAD binding activity; activin binding activity; and transmembrane receptor protein serine/threonine kinase activity. Predicted to be involved in several processes, including heart development; protein phosphorylation; and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to act upstream of or within phosphorylation and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of activin receptor complex. Predicted to be active in plasma membrane. Is expressed in brain; endoderm; eye; heart; and pharyngeal arch. Human ortholog(s) of this gene implicated in Ferguson-Smith tumor; Loeys-Dietz syndrome 1; Lynch syndrome; and urinary bladder cancer. Orthologous to human TGFBR1 (transforming growth factor beta receptor 1).

NR:

description
PREDICTED: TGF-beta receptor type-1-like

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04674 TGFBR1, ALK5; TGF-beta receptor type-1

RNA

RNA id representative length rna type GC content exon number start site end site
TU16478 False 659 TUCP 0.36 4 10769515 10783951
TU16480 False 1060 TUCP 0.38 7 10767974 10861554
XM_043259526.1 True 1958 mRNA 0.51 10 10831110 10861595

Neighbor

gene id symbol gene type direction distance location
xirp1 LOC107722568,LOC107688450,LOC107585289,LOC107689412,LOC107718087,LOC107589818 coding downstream 41128 10710965 ~ 10726846 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding downstream 83319 10669470 ~ 10684655 (-)
LOC122359387 LOC107688520 coding downstream 102904 10664288 ~ 10665070 (-)
rreb1b rreb1,LOC107722578,LOC107718094,LOC107689404,LOC107589881 coding downstream 112125 10625072 ~ 10655849 (-)
riok1 riok1,LOC107689403,LOC107589821,LOC102776549,LOC107688531 coding downstream 143230 10616301 ~ 10624744 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding upstream 2476 10864071 ~ 10889273 (-)
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 293667 11155262 ~ 11159313 (-)
slc12a7a LOC107722598,LOC107585218,LOC107589906,LOC107718080,LOC107688522 coding upstream 344849 11206444 ~ 11227249 (-)
myh7 vmhc,LOC107688458,LOC107722552,LOC107589804,LOC107680223 coding upstream 439497 11301092 ~ 11312718 (-)
ano8a LOC107718073,LOC107688459,LOC107589801,LOC107586092,LOC107722556,LOC107680225 coding upstream 479793 11341388 ~ 11350664 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding downstream 98560 10669062 ~ 10669414 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding downstream 99007 10667642 ~ 10668967 (-)
G11057 NA non-coding downstream 101262 10666477 ~ 10666712 (-)
G10987 NA non-coding downstream 541118 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 607910 10158578 ~ 10160064 (-)
G11115 NA non-coding upstream 54476 10916071 ~ 10918689 (-)
G11118 NA non-coding upstream 91332 10952927 ~ 10978280 (-)
LOC122359508 NA non-coding upstream 239927 11101522 ~ 11104592 (-)
LOC122359521 LOC107674200,LOC107602529,LOC107729365,LOC107584650,LOC107679329 non-coding upstream 255402 11116997 ~ 11120787 (-)
G11234 NA non-coding upstream 285653 11147248 ~ 11150504 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other downstream 3083 10758028 ~ 10764891 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 346499 10392682 ~ 10421475 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other downstream 389763 10376063 ~ 10378211 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 447571 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 624265 10140935 ~ 10143709 (-)
LOC122359462 NA other upstream 35954 10897549 ~ 10902625 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 474123 11335718 ~ 11339611 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other upstream 517648 11379243 ~ 11405700 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other upstream 579395 11440990 ~ 11445113 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other upstream 585494 11447089 ~ 11453203 (-)

Expression


Co-expression Network