G11101


Basic Information

Item Value
gene id G11101
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10757190 ~ 10829289 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16482
GGGTCACACTACAATAGCACCAAACTGTTCTGCAGCCCACATTGGCATTAACATATCGATGAATGAATGAGTTCCGGCTCAGAAAGGCAGGAAATGATGTGGGATGCAGCCAGAAACACTTACACTATGATATGCAATCTCACTGTGTGTTCTCCAGTGCATGATGCAACACAAGTGCCTCAATTTTATAAAGATTTCTGCTTTCCGCAAATTATTGGTATAACCAGTCCCCGAAAAACCAGAATGGATCTGCGTTTGCAGcgattttcagcattttaaagtcatacatttgtttttctttgttcattCCAAGGTTATGGTTTATGTACAGACAAATTTTGCtattcagt
>TU16483
attaatggtttactatgaaaataatttttaaataaatgtaaacatttacaaaatcatTAGACACTCTAgacttcagaaattattttgatattctgatttgctgttcaaaacaaaaataaaaattaaaataaatgataaataaatggtaaagtgtgtaatgttacaaaagctttttaagatgtttagcttttaatattttcctgaagaaaaaaaaaattactcaactgtttaaaatattgataatacTTTCTTGATCAGCatatagaatgatttctgaaggatcatgtgacattgaaaacTGTAGTAATGATGCCAAAAAAGTAGCTTTGATCACAGCATTAAGTCACATAAAAGTggatttaaatagtttttttttttttttttttttttaatattaaaggtttttcacattattactgttttactattttctgtattttggatgaaataaatgcaggcttgacGAGCAGAGAAAAAATTTAAGATCTTACTGTTTAAAAACGTTTGACtggcagtgtttgtgtgtgatatatatacatatacatacattcacacactcatAGGAAACATGCTGTCGTATAACTACTTGGTTACTTTGGTGTCATCTAACATTCAGTATTTTCAATTTGAGTTTAAAAGGGGGAGGGAGGGGGTCACACTACAATAGCACCAAACTGTTCTGCAGCCCACATTGGCATTAACATATCGATGAATGAATGAGTTCCGGCTCAGAAAGGCAGGAAATGATGTGGGATGCAGCCAGAAACACTTACACTATGATATGCAATCTCACTGTGTGTTCTCCAGTGCATGATGCAACACAAGTGCCTCAATTTTATAAAGATTTCTGCTTTCCGCAAATTATTGGTATAACCAGTCCCCGAAAAACCAGAATGGATCTGCGTTTGCAGcgattttcagcattttaaagtcatacatttgtttttctttgttcattCCAAGGTTATGGTTTATGTACAGACAAATTTTGCtattcagt
>TU16484
attaatggtttactatgaaaataatttttaaataaatgtaaacatttacaaaatcatTAGACACTCTAgacttcagaaattattttgatattctgatttgctgttcaaaacaaaaataaaaattaaaataaatgataaataaatggtaaagtgtgtaatgttacaaaagctttttaagatgtttagcttttaatattttcctgaagaaaaaaaaaattactcaactgtttaaaatattgataatacTTTCTTGATCAGCatatagaatgatttctgaaggatcatgtgacattgaaaacTGTAGTAATGATGCCAAAAAAGTAGCTTTGATCACAGCATTAAGTCACATAAAAGTggatttaaatagtttttttttttttttttttttttaatattaaaggtttttcacattattactgttttactattttctgtattttggatgaaataaatgcaggcttggcgAGCAGAGAAAAAATTTAAGATCTTACTGTTTAAAAACGTTTGACtggcagtgtttgtgtgtgatatatatacatatacatacattcacacactcatAGGAAACATGCTGTCGTATAACTACTTGGTTACTTTGGTGTCATCTAACATTCAGTATTTTCAATTTGAGCTTAAAAGGGGGGGGTATTGTAGTCACACTACAATAGCACCAAACTGTTCTGCAGCCCGCATTGGCATTAACATATCGATGAATGAATGAGTTCCGGCTCAGAAAGGCAGGAAATGATGTGGGATGCAGCCAGAAACACTTACACTATGATATGCAATCTCACTGTGTGTTCTCCAGTGCATGATGCAACACAAGTGCCTCAATTTTATAAAGATTTCTGCTTTCCGCAAATTATTGGTATAACCAGTCCCCGAAAAACCAGAATGGATCTGCGTTTGCAGcgattttcagcattttaaagtcatacatttgtttttctttgttcattCCAAGGTTATGGTTTATGTACAGACAAATTTTGCtattcagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16482 False 350 lncRNA 0.41 2 10757190 10828639
TU16483 False 1000 lncRNA 0.31 2 10757190 10829289
TU16484 True 1001 lncRNA 0.44 2 10757190 10829289

Neighbor

gene id symbol gene type direction distance location
xirp1 LOC107722568,LOC107688450,LOC107585289,LOC107689412,LOC107718087,LOC107589818 coding downstream 30344 10710965 ~ 10726846 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding downstream 72535 10669470 ~ 10684655 (-)
LOC122359387 LOC107688520 coding downstream 92120 10664288 ~ 10665070 (-)
rreb1b rreb1,LOC107722578,LOC107718094,LOC107689404,LOC107589881 coding downstream 101341 10625072 ~ 10655849 (-)
riok1 riok1,LOC107689403,LOC107589821,LOC102776549,LOC107688531 coding downstream 132446 10616301 ~ 10624744 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding upstream 34782 10864071 ~ 10889273 (-)
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 325973 11155262 ~ 11159313 (-)
slc12a7a LOC107722598,LOC107585218,LOC107589906,LOC107718080,LOC107688522 coding upstream 377155 11206444 ~ 11227249 (-)
myh7 vmhc,LOC107688458,LOC107722552,LOC107589804,LOC107680223 coding upstream 471803 11301092 ~ 11312718 (-)
ano8a LOC107718073,LOC107688459,LOC107589801,LOC107586092,LOC107722556,LOC107680225 coding upstream 512099 11341388 ~ 11350664 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding downstream 87776 10669062 ~ 10669414 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding downstream 88223 10667642 ~ 10668967 (-)
G11057 NA non-coding downstream 90478 10666477 ~ 10666712 (-)
G10987 NA non-coding downstream 530334 10226218 ~ 10226856 (-)
G10869 selenof,sep15,LOC107693704,LOC107586130 non-coding downstream 597126 10158578 ~ 10160064 (-)
G11115 NA non-coding upstream 86782 10916071 ~ 10918689 (-)
G11118 NA non-coding upstream 123638 10952927 ~ 10978280 (-)
LOC122359508 NA non-coding upstream 272233 11101522 ~ 11104592 (-)
LOC122359521 LOC107674200,LOC107602529,LOC107729365,LOC107584650,LOC107679329 non-coding upstream 287708 11116997 ~ 11120787 (-)
G11234 NA non-coding upstream 317959 11147248 ~ 11150504 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 335715 10392682 ~ 10421475 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other downstream 378979 10376063 ~ 10378211 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 436787 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 613481 10140935 ~ 10143709 (-)
pkn2a pkn2,LOC107693716,LOC107585639,LOC107722607,LOC107718113,LOC107691687 other downstream 617605 10119973 ~ 10139585 (-)
LOC122359462 NA other upstream 68260 10897549 ~ 10902625 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 506429 11335718 ~ 11339611 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other upstream 549954 11379243 ~ 11405700 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other upstream 611701 11440990 ~ 11445113 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other upstream 617800 11447089 ~ 11453203 (-)

Expression


Co-expression Network