G11105 (LOC107688455,LOC107585244,LOC107722600)


Basic Information

Item Value
gene id G11105
gene name LOC107688455,LOC107585244,LOC107722600
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 10800716 ~ 10803288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16500
AGTACTATATACCATTTAATGTCTTATAGATTGAGTgaaatccaattttttttaaccGCTTGTCTATGTTTTTCAGGGACGCAAAGGTGAAGAAGGAAAAACAGGGCAGAGAGGACCTCCAGGACTTCCAGGATTACCTGGAGAATCTGGAGTCAAAGGAGAAAAGGGTGATACTGGGGTTGGTCTGCCTGGTCCACCAGGACTTCCCGGACCACCAGGGTCATCCAAACCAATTAAAGTTCCAtatggATTTGATGCCCTCGGCTCTGGATTTGAAGATGTCGACATTGATACAGAACGTCTTAGAGGTCCACCTGGTCCTCCGGGGCCTCCAGGGAAACCTGGCCCACCTGGTCCCAATGGCCCCTTAGGAGCTTTGCTGCCTGGACCACCAGGCACTCCTGGCAAGGATGGGAGAGTTGGGCAACCTGGACTTCGTGTGAGTATGCTCTCTCTTCAGCTTAATCAGCTGCTGAAGAGAGGCtcagtttacatttcattacaatTCAGATCTCAT

Function

NR:

description
PREDICTED: collagen alpha-1(XVIII) chain-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16500 True 517 TUCP 0.42 5 10800716 10803288

Neighbor

gene id symbol gene type direction distance location
xirp1 LOC107722568,LOC107688450,LOC107585289,LOC107689412,LOC107718087,LOC107589818 coding downstream 73870 10710965 ~ 10726846 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding downstream 116061 10669470 ~ 10684655 (-)
LOC122359387 LOC107688520 coding downstream 135646 10664288 ~ 10665070 (-)
rreb1b rreb1,LOC107722578,LOC107718094,LOC107689404,LOC107589881 coding downstream 144867 10625072 ~ 10655849 (-)
riok1 riok1,LOC107689403,LOC107589821,LOC102776549,LOC107688531 coding downstream 175972 10616301 ~ 10624744 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding upstream 60783 10864071 ~ 10889273 (-)
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 351974 11155262 ~ 11159313 (-)
slc12a7a LOC107722598,LOC107585218,LOC107589906,LOC107718080,LOC107688522 coding upstream 403156 11206444 ~ 11227249 (-)
myh7 vmhc,LOC107688458,LOC107722552,LOC107589804,LOC107680223 coding upstream 497804 11301092 ~ 11312718 (-)
ano8a LOC107718073,LOC107688459,LOC107589801,LOC107586092,LOC107722556,LOC107680225 coding upstream 538100 11341388 ~ 11350664 (-)
LOC122359505 LOC107722600,LOC107688455,LOC107585244 non-coding downstream 4642 10794358 ~ 10796074 (-)
G11063 rpp40,LOC107688445,LOC107722637,LOC107689405 non-coding downstream 131302 10669062 ~ 10669414 (-)
G11064 rpp40,LOC107722637,LOC107688445,LOC107689405 non-coding downstream 131749 10667642 ~ 10668967 (-)
G11057 NA non-coding downstream 134004 10666477 ~ 10666712 (-)
G10987 NA non-coding downstream 573860 10226218 ~ 10226856 (-)
G11104 col15a1b,LOC107688455,LOC107585244,LOC107722600 non-coding upstream 199 10803487 ~ 10883304 (-)
LOC122359532 NA non-coding upstream 227 10803515 ~ 10803936 (-)
G11115 NA non-coding upstream 112783 10916071 ~ 10918689 (-)
G11118 NA non-coding upstream 149639 10952927 ~ 10978280 (-)
LOC122359508 NA non-coding upstream 298234 11101522 ~ 11104592 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other downstream 35825 10758028 ~ 10764891 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 379241 10392682 ~ 10421475 (-)
G11011 chd7,LOC107585562,LOC107722533,LOC107688517,LOC107718105,LOC107589837,LOC107689390 other downstream 422505 10376063 ~ 10378211 (-)
ca8 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC107722503,LOC102778484 other downstream 480313 10314033 ~ 10320403 (-)
lmo4 LOC107722609,LOC107693715,LOC107691760,LOC107589910 other downstream 657007 10140935 ~ 10143709 (-)
LOC122359462 NA other upstream 94261 10897549 ~ 10902625 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 532430 11335718 ~ 11339611 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other upstream 575955 11379243 ~ 11405700 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other upstream 637702 11440990 ~ 11445113 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other upstream 643801 11447089 ~ 11453203 (-)

Expression


Co-expression Network