kcnh2a (kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123)


Basic Information

Item Value
gene id kcnh2a
gene name kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11229760 ~ 11264234 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16555
AGGTGCCATGCACCGCAAAGCCAGCTTGCAGAATGCGACTTCTGACACAGATCTCATTCGGCTCCGGACCGCAGCTCAGGGCCCCCGAATATCACACACCTTAATAGATATGAAGTCAGACCCCTTAATCGCTGTTCCACCGGGTGAGATTGACATCATCGCCCCCTGCAAACTAATAGATCGGACCCACAACGTGACAGAGAAAGTCACACAGGTGCTGTCTCTGGGTGCAGATGTCCTTCCTGAGTATAAGCTCCAGGCTCCCCGAATCCACAAATGGACCATTTTACACTACAGCCCCTTTAAAGCAGTCTGGGACTGGGTCATCTTGCTGCTTGTCATCTATACGGCCATCTTTACACCTTATTCGGCTGCGTTCCTGCTCAGCGATGAGGAAGAGGCCGCCATGCAGCGCTGCGGTTACTCCTGCAGTCCACTCAACGTGGTGGACCTCATTGTGGATATCATGTTC
>XM_043256326.1
TGCAtccatttgcaaaaaaaaggaaGCAGGTGACGTGAGGTAATTGGACAGACAGATGATTTACCGAGCGCGAGGATGCGCGCGCTGACAATTTCAAGGCGTAATTACTGTGAGACTTTAAAGAGGCGCGCGCTCGTGTTGCTTTTATGTCGATGAGGTGTAAATGCAAAgcttgtgtgcatgtgtgagcccaggcggAGCAGTCAATATAGCTCTCTTCTTGAAAATAAACACGAGCTCGGGCGGAACTTGCAGAACTTTTTTGCCCCACTAAAGTAGGACATAATGCCTGTTCGACGGGGACACGTTGCGCCTCAGAACACCTTCCTGGACACCATCATTCGGAAATTCGAGGGGCAAAATCGTAAATTCATCATCGCCAATGCTCGAGTTGAAAACTGCGCCATTATCTTCTGCAATGATGGTTTTTGTGGCATGTGCGGCTACACGCGAGCAGAGGTCATGCAGAAGCCTTGTACCTGCAGTTTTCTGTATGGACCACATACTGGACGGCCAGCGGTGGCCCAGATGGCCAAAGCTTTACTGGGCTCTGAGGAAAGGAAAGTTGAGATCTCCTTATATAGGAAAGATGGTGTGTGTTTGCCGTGCTTTGTTGATGTGGTTCCAGTTAAGAATGAGGATGGTTTGGTCATCATGTTCATCCTGAATTTTGAGCTGGCAGATGAACAGGACAGACCCCTCGAAAGCTCACCGGGCAGAGAGATCAACCACAAACACATCCCGTGGCTCTCTAAAGGCATTTCCTCAGCAAGAAGACGGCGTCTCAGGCTGCCCCTGCCTTTGCTGCGCTCTTTAAGTGGCAGCAAACAGTCTGTGAATGACGATTCTGAAAGAGGCTACATGCAGCCGATGCCCCATATGGGCCATGAGTCAGTAGCCCTGGACAAACTGCTCTCCCTGCCTGAGCGCTCTGCACTGGGAGGATCTCAGCTGTTTTTATGGGAAGATAAGGCACAGAATGAACCTGAAAGTGAGCCAAGGCCATCAGAAGCGTCCCCTCCCCTGCCTCAGGCCTTCTCTCAGTCCTCCCCTCGTCTGCACAACCTCACCTCAGAGGCATCTCCTTCCAGCTGCAGCATGGCACACAGCCGCTCCTGCGAGAGCCTATGTGGCATGCGGCCCTCACCCTCCACCAATGACTTCAACTGGGACAGAAAGCTGCCGGTCAGACCCAGCAGCACAGGTGCCATGCACCGCAAAGCCAGCTTGCAGAATGCGACTTCTGACACAGATCTCATTCGGCTCCGGACCGCAGCTCAGGGCCCCCGAATATCACACACCTTAATAGATATGAAGTCAGACCCCTTAATCGCTGTTCCACCGGGTGAGATTGACATCATCGCCCCCTGCAAACTAATAGATCGGACCCACAACGTGACAGAGAAAGTCACACAGGTGCTGTCTCTGGGTGCAGATGTCCTTCCTGAGTATAAGCTCCAGGCTCCCCGAATCCACAAATGGACCATTTTACACTACAGCCCCTTTAAAGCAGTCTGGGACTGGGTCATCTTGCTGCTTGTCATCTATACGGCCATCTTTACACCTTATTCGGCTGCGTTCCTGCTCAGCGATGAGGAAGAGGCCGCCATGCAGCGCTGCGGTTACTCCTGCAGTCCACTCAACGTGGTGGACCTCATTGTGGATATCATGTTCGTGGTGGACATTGTGATTAACTTTCGCACAACCTACGTGAACAGCAACGATGAAGTGGTCAGTCAGCCCGGCCGAATAGCAATCCACTATTTTAAAGGCTGGTTCCTCATTGACATGGTGGCTGCCATTCCTTTCGACTTGCTCATTTATCGCTCCGTAGAAGATACGACGACTCTGATTGGTCTTTTGAAGACTGCTCGGCTGCTGCGATTAGTGCGTGTGGCACGTAAACTCGATCGCTACTCCGAGTATGGAGCCGCGGTGCTCTTTCTCCTCATGTGCACCTTCGCACTAATCGCTCATTGGCTGGCCTGCATCTGGTATGCTATTGGAAATGTGGAGAGGAGCGGCCAATCTCGGATCGGTTGGCTTGATTCTTTGGGTGAACAGCTGGGGAAACCGTATAATAAGACGAATCCTGCATCAGGACCCTCcattaaagataaatatgtcACTGCTCTATACTTCACCTTCAGCAGCCTCACCAGCGTGGGATTTGGAAACGTCTCTCCAAACACCAACTCTGAGAAGATCTTTTCTATCTGTGTCATGCTTATTGGAGCGCTGATGTATGCCAGCATATTTGGAAACGTGTCAGCCATCATCCAGAGGCTGTACTCTGGCACGGCACGTTACCACACTCAGATGCTGCGGGTTCGGGAGTTCATCCGTTTCCACCAGATCCCCAACCCACTCAGGCAAAGGCTGGAGGAGTATTTTCAGCACGCTTGGTCCTACACTAACGGCATTGACATGAATGCTGTGCTGAAGGGGTTCCCAGAGTGCTTACAGGCAGACATCTGTTTGCATCTAAATCGTACACTGCTGCAGAACTGTAAAGCTTTCAAGGGCTCCACTAAAGGTTGCTTACGTGCTTTGGCTATGAAGTTCAAGACTACACATGCTCCACCTGGAGACACCTTGGTCCATGCTGGTGATGTCATTTCGGCGCTGTACTTCATTTCTCGTGGCTCCATTGAGATCTTAAAGGGAGATGTGGTAGTGGCCATTTTAGGCAAGAATGATATATTCGGAGAGCCCATTAACTTATATGCGCGTCCTGGAAAGTCAAGCTCTGATGTGAGAGCACTGACGTACTGTGACCTGCATAAAATCCACAGAGATGATATCGTGGAGGTCTTGGACATGTATCCAGAGTTCTCAGACTACTTCTGGAGCAACCTAGAGATCACCTTCAACTTGAGAGATACTAATACTAAAGCTGGGTCAATGAgcagtgacactgaagattctGACCATGGCTGTCTGGACCATCACACACGAAGAGCAAAGCTGTTCTTTCAGTCCAAAAGAAACTCTATCCCACAAGCAGATGCAGAGAAGACTGAAGAAAATCTCAATAAGACGCCTTTCAAAACCCAGAATTCAAGCAAGCAGCACAAGGATAGACAAGCTGCTCATCGGGACTCAGACATTTTTGCCTCCCAATCCAGTAgtgatgaagaggaagagaCGCGACGACTCCCTCTGATAGTAAACTCTCAGAGCCGTATCACTAGCATCAGCAATGCTAACAAAGACAAGAACCACAACAGCAGCAACTCTTTCAACGCACTGTCAGGTGCTCTTTCTGGGGTTTCAAACATCTTCAGCTTCTGGGGGGACAGTCGTGGCCACCATTACCAGGAAGTACCCAGCCACAGCATGTCCTTACCCTCATCTTCGGTGCCCTCTAATACTGTCCTGCACAGTGCTACCCATCGTCATTGCACAGAGGTAGAAAATAGACTGGAAATGATACAGAGACAGCTCCACCGattGGAGAAGCGCATGTCAACAGACATGGGGGCCATAATGCAGTTGCTTCAGAGGCAGATGGTGCTGGTTCCACCAGCCTATAGCTCTGTAACATCCCCTGTAGAAGCATCTCCAAATCCACCCAAACCAGGCCAGAAACTGGTCCATCCTGTCAACCCTTTAGAGACAGAAACGCCAGCCATTCTCTCTGAGATACTTGACCCCCACGACTTTGCTGACAGTCTCAAAAAGTCCAGTGAAAGTCTTTCAGGTGCAATGGAGCTCCAACTCCTGGACTCTTCGTTGCAGCCCTCCTCTGAGAGCCCTTCTGGGGCTTATACTGGACGATGGCCACATAACATGGACCACAATGCAGCAAATGCTCCCGATTATCTCACAGCTCACACTGATCACCAACATACAGTCACAGCTGATCGAGGTAATTATAGTTTTTTAGATGCTGAGCCTATTGGAACAGTGCACCATCAACGATCTGGACTGAGGTTAGATTTGGAGTGTTCAAGACGCCTATCATTGCCAGTGCAACATCACACAGAGGATAATTCCTCAATACAAAAACGACATGGCTCTAATCCTGGGTGATAAGATTGAAACTTGTATTCAGCATCTCAGTGGAAAACAATGCATGCATCCTGATGGACCACAACAATGTTTGCAGGATGTTTTGAAGACCTTCTACTTCAGGTTCATATTAATTACCTCAGAAAGTAGAGGCAACATTAATGTCCATGTAGTTTGGTACATTTGTGTTAGCTGGTCTAACAGTACTTGTGGTTTTTACCTGCCTCTCActgaaaacgttttattttacgAAAGTGTTCTCTTGTTATTTTGAGGTGTCAATGTAATGATTTGTATTAgcatatcagtttttttttaacggtGTAGTTTTGTGATGAATTGATTGTTTGTTTGGAAGCCTTGGACATGTAGCAATACACTGGAGTCCCATCAgagtatgatttatttaaacactgttttaaatgatCGTTTGGAAATTTTATCTCAGGTGGAGGAACCCGAAGCTCATCTCTAGTAGCTGAAATACCTCAGAGTGAGTGATTCCAGGGAACACCGGTGAATCCTGCTGAGTAACATGTCATGACTGAAAGCATGTGTTTATATCATTCAAGGCCACCTATTGCACAGATTTTCCCTTGAGAATATGTTATCACTCTGAATATATAATCATCAGTTTGGCCAAAGGgtcaaaatgtgttaaatgttatttagaCAGTTTATGAATGAAAATCCATTTTGATCATAATCCATATCATTAGTGCAATTagtgttaaaatatacatatataatgcataatataatcAGTTAGCACTGGTTCATGCCAAACTCATCCATTAGTAAACCATACTATAAATGTGAAAGATATTTATAGGGAATGTGATTTATAGAAAGAGTATAGCTAGgaatgtttatatgtattataacaTGAAATTAATTGCAATCCTAAGTAGGAATATTTATTGTAAGCTTACTATAAATGATTAttgtgcagattttttttctcttattaacGTATAA

Function

symbol description
kcnh2a Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of membrane potential. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; gill; heart; immune system; and muscle. Human ortholog(s) of this gene implicated in long QT syndrome; long QT syndrome 2; and short QT syndrome. Orthologous to human KCNH2 (potassium voltage-gated channel subfamily H member 2).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily H member 6-like isoform X2

GO:

id name namespace
GO:0086091 regulation of heart rate by cardiac conduction biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
K04905 KCNH2, KV11.1; potassium voltage-gated channel Eag-related subfamily H member 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU16555 False 472 TUCP 0.53 2 11240126 11256764
XM_043256326.1 True 4992 mRNA 0.47 15 11229760 11264234

Neighbor

gene id symbol gene type direction distance location
LOC122361723 gyg1a,LOC107550614,LOC107709894,LOC107722604,LOC107688484,LOC107585020 coding upstream 90932 11137101 ~ 11138828 (+)
LOC122359360 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC106599582 coding upstream 312022 10908283 ~ 10917738 (+)
si:dkey-24c2.9 LOC107718082,LOC107689417,LOC107589878 coding upstream 476950 10748820 ~ 10752810 (+)
gorasp1a LOC107688453,LOC107722575,LOC107585269,LOC107689416,LOC107589815,LOC107718085 coding upstream 481419 10742485 ~ 10748341 (+)
csrnp1a LOC107722574,LOC107585280,LOC107689421,LOC107589814,LOC107718084,LOC107683225,LOC107688521 coding upstream 487789 10733916 ~ 10741971 (+)
map4l si:dkey-77a20.5,LOC107722549,LOC107688456,LOC107676095,LOC107589807,LOC107718078 coding downstream 1057 11265291 ~ 11300035 (+)
nr2f6a nr2f6a,LOC107722588,LOC107688466,LOC107585161,LOC107680251 coding downstream 96105 11360339 ~ 11367651 (+)
angptl4 LOC107585108,LOC107688469,LOC107680254,LOC107709905,LOC107550621,LOC107722496 coding downstream 168855 11433089 ~ 11438717 (+)
pik3r2 pik3r2,LOC107688475,LOC107709897,LOC107550618,LOC107586063,LOC107722495 coding downstream 244478 11508712 ~ 11535896 (+)
ifi30 LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898 coding downstream 272731 11536965 ~ 11538807 (+)
G11137 slc12a7a,LOC107589906,LOC107718080 non-coding upstream 18185 11209001 ~ 11211575 (+)
G11138 NA non-coding upstream 23722 11205743 ~ 11206038 (+)
G11133 NA non-coding upstream 72419 11156538 ~ 11157341 (+)
G11117 NA non-coding upstream 251480 10953050 ~ 10978280 (+)
G11106 NA non-coding upstream 332263 10896683 ~ 10897497 (+)
G11162 LOC108271487,LOC107589804,LOC106579610,LOC105009935 non-coding downstream 40683 11304917 ~ 11321347 (+)
G11170 kcnn1a,LOC107722564,LOC107585128,LOC107718068,LOC106535681 non-coding downstream 79537 11343771 ~ 11392670 (+)
G11152 LOC107586083,LOC107688534,LOC107722517,LOC107589904 non-coding downstream 89632 11353866 ~ 11355216 (+)
G11177 NA non-coding downstream 144398 11408632 ~ 11409086 (+)
G11179 crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903 non-coding downstream 182278 11446512 ~ 11448561 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other upstream 93769 11119854 ~ 11135991 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other upstream 511566 10711130 ~ 10718194 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other upstream 564650 10662729 ~ 10665110 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other upstream 1067951 10158532 ~ 10161809 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other upstream 1312899 9911628 ~ 9916861 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other downstream 39444 11303678 ~ 11338469 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other downstream 75501 11339735 ~ 11341111 (+)
rps28 NA other downstream 157856 11422090 ~ 11444571 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other downstream 217870 11482104 ~ 11507704 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 643839 11908073 ~ 11937590 (+)

Expression


Co-expression Network