mrpl34 (LOC107688463,LOC107585198,LOC107722555,LOC107680228)


Basic Information

Item Value
gene id mrpl34
gene name LOC107688463,LOC107585198,LOC107722555,LOC107680228
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11339735 ~ 11341111 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16565
GGAAGAGACACGAGACACAAGGCATGCGATGACTTTGGTGTGATATTGATGAAAGCTAAATCCGAAATGAACACGTTACGAACAACACTTTTGCGCATTTCTGGGGGACAGAGTTTGTGTCGGAGTAATGGCCCTAACTCAGCCGTATCCAGCTGCAGTCAGCTACGCTCTATCAGTTCCTTGCTTCTGTCACGGGCAGTAGCTGAGCAGAAGCCTGTCCTGCAAGGAACCCTGAACACCAAAGCAGAGGGAGTTTGTGTTTCCCAGCAGCCACTCTGGCAGCATCAACAGGTCCGCACAGTCAAACGTGGGACAGAGTATCAGCCGAAGAACATCAAACGAAAGAGGACCCATGGGTGGATCAAAAGAATTAGCACTCCAAGTGGGATCGAAGTAATCCTGCGCCGAATGCTCAAAGGACGAAAGTCTCTCACTCATTGATGCTCTGACCGGACACTGGCTTTGATGGGTCTTTGAAGTAAATCTCAGTTGAATGTCAGCTGTGCAGTAGAGCTTTTGAGTTTCTAGTGGGAATAattgtcaaattaaaacaatgcacaGTGGAGTCAATAGATGCCACTTCATTGGGtggtatttgtttttatttcagtttgatgGATCTTGTCCGTCTTCATACTTCCAGTTGAGCGTATTCATGTCAAAGTTTTTGGCGTGTTCTCAGATCAGGGGATTcacttttggattttttttaataacatcagCATACTTGTAAGTAATCAAAATAGGACAGGAAGTATAAGtgagagttgttgttttttttttaattatta
>XM_043219439.1
AAATTATCaacagtttttttgtattaaaattaagtaaataaaactcTATGCTACGCATATGTCATTCTGAGCCCGACTTCAAGGGGGCAGTAGTGAGCATTGAAGACTCCGGCTAGCCGCCCAGCAGAGGAAGAGACACGAGACACAAGGCATGCGATGACTTTGGTGTGATATTGATGAAAGCTAAATCCGAAATGAACACGTTACGAACAACACTTTTGCGCATTTCTGGGGGACAGAGTTTGTGTCGGAGTAATGGCCCTAACTCAGCCGTATCCAGCTGCAGTCAGCTACGCTCTATCAGTTCCTTGCTTCTGTCACGGGCAGTAGCTGAGCAGAAGCCTGTCCTGCAAGGAACCCTGAACACCAAAGCAGAGGGAGTTTGTGTTTCCCAGCAGCCACTCTGGCAGCATCAACAGGTCCGCACAGTCAAACGTGGGACAGAGTATCAGCCGAAGAACATCAAACGAAAGAGGACCCATGGGTGGATCAAAAGAATTAGCACTCCAAGTGGGATCGAAGTAATCCTGCGCCGAATGCTCAAAGGACGAAAGTCTCTCACTCATTGATGCTCTGACCGGACACTGGCTTTGATGGGTCTTTGAAGTAAATCTCAGTTGAATGTCAGCTGTGCAGTAGAGCTTTTGAGTTTCTAGTGGGAATAattgtcaaattaaaacaatgcacaGTGGAGTCAATAGATGCCACTTCATTGGGtggtatttgtttttatttcagtttgatgGATCTTGTCCGTCTTCATACTTCCAGTTGAGCGTATTCATGTCAAAGTTTTTGGCGTGTTCTCAGATCAGGGGATTcacttttggattttttttaataacatcagCATACTTGTAAGTAATCAAAATAGGACAGGAAGTATAAGtgagagttgttgtttttttttt

Function

NR:

description
probable 54S ribosomal protein L34, mitochondrial isoform X2

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02914 RP-L34, MRPL34, rpmH; large subunit ribosomal protein L34

RNA

RNA id representative length rna type GC content exon number start site end site
TU16565 False 791 TUCP 0.44 2 11339863 11341111
XM_043219439.1 True 911 mRNA 0.44 2 11339735 11341103

Neighbor

gene id symbol gene type direction distance location
map4l si:dkey-77a20.5,LOC107722549,LOC107688456,LOC107676095,LOC107589807,LOC107718078 coding upstream 39700 11265291 ~ 11300035 (+)
LOC122361723 gyg1a,LOC107550614,LOC107709894,LOC107722604,LOC107688484,LOC107585020 coding upstream 200907 11137101 ~ 11138828 (+)
LOC122359360 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC106599582 coding upstream 421997 10908283 ~ 10917738 (+)
si:dkey-24c2.9 LOC107718082,LOC107689417,LOC107589878 coding upstream 586925 10748820 ~ 10752810 (+)
gorasp1a LOC107688453,LOC107722575,LOC107585269,LOC107689416,LOC107589815,LOC107718085 coding upstream 591394 10742485 ~ 10748341 (+)
nr2f6a nr2f6a,LOC107722588,LOC107688466,LOC107585161,LOC107680251 coding downstream 19228 11360339 ~ 11367651 (+)
angptl4 LOC107585108,LOC107688469,LOC107680254,LOC107709905,LOC107550621,LOC107722496 coding downstream 91978 11433089 ~ 11438717 (+)
pik3r2 pik3r2,LOC107688475,LOC107709897,LOC107550618,LOC107586063,LOC107722495 coding downstream 167601 11508712 ~ 11535896 (+)
ifi30 LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898 coding downstream 195854 11536965 ~ 11538807 (+)
mpv17l2 mpv17l2,LOC107585061,LOC107688480,LOC107709899,LOC107722522,LOC107680257,LOC107550616 coding downstream 197838 11538949 ~ 11540984 (+)
G11162 LOC108271487,LOC107589804,LOC106579610,LOC105009935 non-coding upstream 18388 11304917 ~ 11321347 (+)
G11137 slc12a7a,LOC107589906,LOC107718080 non-coding upstream 128160 11209001 ~ 11211575 (+)
G11138 NA non-coding upstream 133697 11205743 ~ 11206038 (+)
G11133 NA non-coding upstream 182394 11156538 ~ 11157341 (+)
G11117 NA non-coding upstream 361455 10953050 ~ 10978280 (+)
G11170 kcnn1a,LOC107722564,LOC107585128,LOC107718068,LOC106535681 non-coding downstream 2660 11343771 ~ 11392670 (+)
G11152 LOC107586083,LOC107688534,LOC107722517,LOC107589904 non-coding downstream 12755 11353866 ~ 11355216 (+)
G11177 NA non-coding downstream 67521 11408632 ~ 11409086 (+)
G11179 crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903 non-coding downstream 105401 11446512 ~ 11448561 (+)
G11186 crsp7,LOC107688472,LOC107722610,LOC107585090,LOC107550620 non-coding downstream 107652 11448763 ~ 11449433 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 1266 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 75501 11229760 ~ 11264234 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other upstream 203744 11119854 ~ 11135991 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other upstream 621541 10711130 ~ 10718194 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other upstream 674625 10662729 ~ 10665110 (+)
rps28 NA other downstream 80979 11422090 ~ 11444571 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other downstream 140993 11482104 ~ 11507704 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 566962 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 1282712 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1526818 12867929 ~ 12874008 (+)

Expression


Co-expression Network