G11170 (kcnn1a,LOC107722564,LOC107585128,LOC107718068,LOC106535681)


Basic Information

Item Value
gene id G11170
gene name kcnn1a,LOC107722564,LOC107585128,LOC107718068,LOC106535681
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11343771 ~ 11392670 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16583
ATAAGTTAGCATGCAACTTTCAATCTCCGGTTGGGTCAAAACAGTAGACTCAGTCTCCTCTGGAGGATCCATCCAGGACATTTTCCTTTCTGAACTGTTGTTCTCTCCAGCAGATTTGGTACTTCTTCTGTGAGTTCCTTGAGCTCTTCATACAGGCAGCGTGAGGCTGTTGGAGATGCTCCTGGAGGGAATGAGTGAGTGGGAGATGCAGAGAGAAGAAGAGCGAAAGACAGAAGAAGAGAgcgatagagagagagagaacgagtgGAGGGGAGGGGTATAGCTGTGTAGCTCGGGGTCACAGTCGCTGTGGTGCCATACCTCTCACAGACCCGGACGGTCCAGGCCGCGATGATCCACGAGGAGATGCTGAAGACCAGCAGCACGGTGCCGGGGCAGATGGTCATGAGGGTCTTCATGACGAAGCGCGTGTTGAAGTTGATCTTGTTGAGGGCACCTATACTGCGCGAGGATGCGTCGGTGAAGAGCTTGCTGTGAAGGAGCATGACCCGGCCAATCAGGTAGAGGCGGAGGAACATGGGGATGGAAAGGATGATGTCTACGTCGGCGTCGGCCACGGAGGGCACGTAGGTGAAAGCCAGCCGGGCCGTCCACGTGAACACGTACTGGCCCGGGATTGGGTGAATGGCACACACCAGCAGCTCCAGGACAATGAAGAAGATGCGCTCATACGTCATGGCTATCCTCCAGTCATCCGCCCCATTGTCCACCATGAACAGCTGTGAGAACAGGGTGCATTTAACAGagcagtttatttttaagtattttgcagaaaccatttaaaacacCTCTACAGAGCGCATGCATACATTGCGTGA

Function

symbol description
kcnn1a Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Orthologous to human KCNN1 (potassium calcium-activated channel subfamily N member 1).

NR:

description
PREDICTED: small conductance calcium-activated potassium channel protein 2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16583 True 839 lncRNA 0.53 2 11343771 11392670

Neighbor

gene id symbol gene type direction distance location
map4l si:dkey-77a20.5,LOC107722549,LOC107688456,LOC107676095,LOC107589807,LOC107718078 coding upstream 43736 11265291 ~ 11300035 (+)
LOC122361723 gyg1a,LOC107550614,LOC107709894,LOC107722604,LOC107688484,LOC107585020 coding upstream 204943 11137101 ~ 11138828 (+)
LOC122359360 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC106599582 coding upstream 426033 10908283 ~ 10917738 (+)
si:dkey-24c2.9 LOC107718082,LOC107689417,LOC107589878 coding upstream 590961 10748820 ~ 10752810 (+)
gorasp1a LOC107688453,LOC107722575,LOC107585269,LOC107689416,LOC107589815,LOC107718085 coding upstream 595430 10742485 ~ 10748341 (+)
angptl4 LOC107585108,LOC107688469,LOC107680254,LOC107709905,LOC107550621,LOC107722496 coding downstream 40419 11433089 ~ 11438717 (+)
pik3r2 pik3r2,LOC107688475,LOC107709897,LOC107550618,LOC107586063,LOC107722495 coding downstream 116042 11508712 ~ 11535896 (+)
ifi30 LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898 coding downstream 144295 11536965 ~ 11538807 (+)
mpv17l2 mpv17l2,LOC107585061,LOC107688480,LOC107709899,LOC107722522,LOC107680257,LOC107550616 coding downstream 146279 11538949 ~ 11540984 (+)
pde4ca pde4ca,LOC107688476,LOC107680260,LOC107709896,LOC107722623,LOC107585054 coding downstream 148875 11541545 ~ 11580423 (+)
G11162 LOC108271487,LOC107589804,LOC106579610,LOC105009935 non-coding upstream 22424 11304917 ~ 11321347 (+)
G11137 slc12a7a,LOC107589906,LOC107718080 non-coding upstream 132196 11209001 ~ 11211575 (+)
G11138 NA non-coding upstream 137733 11205743 ~ 11206038 (+)
G11133 NA non-coding upstream 186430 11156538 ~ 11157341 (+)
G11117 NA non-coding upstream 365491 10953050 ~ 10978280 (+)
G11177 NA non-coding downstream 15962 11408632 ~ 11409086 (+)
G11179 crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903 non-coding downstream 53842 11446512 ~ 11448561 (+)
G11186 crsp7,LOC107688472,LOC107722610,LOC107585090,LOC107550620 non-coding downstream 56093 11448763 ~ 11449433 (+)
G11189 NA non-coding downstream 60901 11453571 ~ 11454111 (+)
G11190 NA non-coding downstream 61588 11454258 ~ 11455408 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 2660 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 5302 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 79537 11229760 ~ 11264234 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other upstream 207780 11119854 ~ 11135991 (+)
G10979 LOC107722568,LOC107585289,LOC107688450,LOC107718087,LOC107689412 other upstream 625577 10711130 ~ 10718194 (+)
rps28 NA other downstream 29420 11422090 ~ 11444571 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other downstream 89434 11482104 ~ 11507704 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 515403 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 1231153 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1475259 12867929 ~ 12874008 (+)

Expression


Co-expression Network