G11179 (crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903)


Basic Information

Item Value
gene id G11179
gene name crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11446512 ~ 11448561 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16597
tcaaaaatgatcaaagaagTCTCTCCTCtagttttaaattgcaaattatATTTGCAATACCCTAACCAAGTGTTGAGCTCTTAGATGGCCTTTGCTTCAAAAACAATGCATATCCCTGGAATATCTGACATggttttaagaaaaacatatgCTGTACTTTTGAAACCAAGTGAAGCTAGCGGAAGCCTTTCCAAACTTTTTACATCAAAGGCACATTGGTAGGACGAAGGTAGCAGAGCACACAGTGTTTGCAAGTCGGCAGCAAATTGGTTTCACCCCCTTCACAAGACGTTTGTCTTCAAAACAATGGCaaggcatttaaaataattttgaatgaagaaaaaaaaaaaaaaaacacgatcaatgtcaaaactgaaaacactgaaTGAATAATAGGACCACAACCTATAAATCTAGGTCTAGAGATGCCTGCGAACAGCAACACAAATGATTGGGTCTTTCATTCAAAATGCTTTGTTTCCTCccaaattaattacattcataaaaaaagaaaaaaaaaagaaagaaaaactttagAAAGGTTTTACATGGATTGCAAGAACTATGTACAGACAAGCAGGATAACGCGCATATTTATTGACACATTTATAGCACAATGCGTCcatatgagaaataaaaagacCATATGGCAGATGCCAAGAAGTGTTTCCTTCTGTACCACCTAAACAAAAGTCTAAATGCCATACATTCACTAAGGCTCTTCAAATAAGAAAGTCATTGTTGAATGGTTTCAGTAAGGCAAACAATATCTAAAAGGAATGGTAACAAGTATATTTCCAGCATATTAACATTTTCCTGCTTTCCTGTCCTCACAGTATGAAGATGAAAAGTAGCACCCTCTGTGGCCATTCACCGCTTTTTCTTCTAGCACACGAATACTTTCTCTTTTTCGACATATTTATccgtatttttctttttacaattaTCTAGGCaaacagatttgtttaaaatatcgTTTTATTTAACACATCTAAAAATAGATTGCTTTTCTCTCATATGAAAATCACGTATATTGAAATCGAGAAAGAAATGTTAAGCGAGAAATGGCGAAATGGAATGTCGGTATCTACTGCAATTAGCACACATAAGTGAGAGCcgctgtgggggaaaaaaaaatgtatttatatatatatatatgcctcaAGTACATCATAAACAAGGGGACAAATGTGTGATGCGAACAGAAAAGCCTCAAACATATCTGCACATCTTAGTGGATAACCTTCTgctatgagaaaaaaaaatggaaaacaaaaatggtcaaataaatAGATGCATACATGATAAGaaacttttataatttattctttgTCACATAAAGCTTTTTTGTAACTGCCAAAAAATGTTCTCGACTTGCTTTTAAACATATCTGTACTGCTCAATGCTTGCTCAGACCCTCCTATTCACACGTTGTGCAAGAACTGGCCCAGTGAAATCCCTGCGAGCCATTATATACAACCCTTGTTTGCAAATTCTTGTTGGTAGCAGCACATTACAAACAGGACGCCACTTCAGCTCCTTCTTGTGGAAAACCAAACTCGGAACAACCGCCGTTGGTTCGTTCTTTACACCTGTAAGATGAACCTATTACAGAGTGACGAGGAGAGTCGCTCTGATCTCCTTCGACTCACAGTGGGAACATTGAAAACTCTTCCAAGCCCTGTTCTCTCAGTCTAGGCAAACATATGGCAGGATGTTCAATTTAGTTTCATCGCCGTGAGGATCCAACGATATACACTCTGTCCAATCGAACCAGGCTCCCTTGGTGTCAAAACAACCGTTCACGCCCGGCCAGTGTTCGTTGTGTATTCTGAGAAGGTCCTCGTTCGTTACCTCCCGGGTCACCCCGGGTAGTTCTGTCGGGGAGCTGCTCGCTACTAACGCATGCGTTTTCCGGGACTCTTTGACGTCGTGTTCTTCTCGCTTAAAATATTTAGTCATGAAAATGTGCGCCCCGTGGCTCTGTGCTCCAGAGGATGTGAGAACGTTGCTCTGAAGGTTAAGGTACGATTGAATGATTTCGTTTCTG

Function

symbol description
crsp7 Predicted to enable transcription coregulator activity. Predicted to be involved in positive regulation of gene expression and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED26 (mediator complex subunit 26).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16597 True 2050 lncRNA 0.41 1 11446512 11448561

Neighbor

gene id symbol gene type direction distance location
angptl4 LOC107585108,LOC107688469,LOC107680254,LOC107709905,LOC107550621,LOC107722496 coding upstream 7795 11433089 ~ 11438717 (+)
nr2f6a nr2f6a,LOC107722588,LOC107688466,LOC107585161,LOC107680251 coding upstream 78861 11360339 ~ 11367651 (+)
map4l si:dkey-77a20.5,LOC107722549,LOC107688456,LOC107676095,LOC107589807,LOC107718078 coding upstream 146477 11265291 ~ 11300035 (+)
LOC122361723 gyg1a,LOC107550614,LOC107709894,LOC107722604,LOC107688484,LOC107585020 coding upstream 307684 11137101 ~ 11138828 (+)
LOC122359360 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC106599582 coding upstream 528774 10908283 ~ 10917738 (+)
pik3r2 pik3r2,LOC107688475,LOC107709897,LOC107550618,LOC107586063,LOC107722495 coding downstream 60151 11508712 ~ 11535896 (+)
ifi30 LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898 coding downstream 88404 11536965 ~ 11538807 (+)
mpv17l2 mpv17l2,LOC107585061,LOC107688480,LOC107709899,LOC107722522,LOC107680257,LOC107550616 coding downstream 90388 11538949 ~ 11540984 (+)
pde4ca pde4ca,LOC107688476,LOC107680260,LOC107709896,LOC107722623,LOC107585054 coding downstream 92984 11541545 ~ 11580423 (+)
rab3aa rab3aa,LOC107585037,LOC107722633,LOC107688479,LOC107709895,LOC107550615 coding downstream 132605 11581166 ~ 11585710 (+)
G11177 NA non-coding upstream 37426 11408632 ~ 11409086 (+)
G11170 kcnn1a,LOC107722564,LOC107585128,LOC107718068,LOC106535681 non-coding upstream 53842 11343771 ~ 11392670 (+)
G11152 LOC107586083,LOC107688534,LOC107722517,LOC107589904 non-coding upstream 91296 11353866 ~ 11355216 (+)
G11162 LOC108271487,LOC107589804,LOC106579610,LOC105009935 non-coding upstream 125165 11304917 ~ 11321347 (+)
G11137 slc12a7a,LOC107589906,LOC107718080 non-coding upstream 234937 11209001 ~ 11211575 (+)
G11186 crsp7,LOC107688472,LOC107722610,LOC107585090,LOC107550620 non-coding downstream 202 11448763 ~ 11449433 (+)
G11189 NA non-coding downstream 5010 11453571 ~ 11454111 (+)
G11190 NA non-coding downstream 5697 11454258 ~ 11455408 (+)
G11191 NA non-coding downstream 7765 11456326 ~ 11456864 (+)
LOC122328936 NA non-coding downstream 160690 11609251 ~ 11613566 (+)
rps28 NA other upstream 1941 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 105401 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 108043 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 182278 11229760 ~ 11264234 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other upstream 310521 11119854 ~ 11135991 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other downstream 33543 11482104 ~ 11507704 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 459512 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 1175262 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1419368 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 2726803 14175364 ~ 14179615 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016385 NA non-coding NC_007113.7 CM002886.2 24555017 ~ 24565293 (-)