G11189


Basic Information

Item Value
gene id G11189
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11453571 ~ 11454111 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16607
tatgctttttaacatttttattcaattcaataaacaaatattaatgcaaaGGTACAAAGACTTAAGCTTCCAcacagaaaaatacagtaaggaCAATGGAATTTAAGCTtgataacattttgttttaaataagtagCACACTTACAAAGCCCACAATGTTTtatattctctctttttttagtttagttttctatttttcataGAAAACATATAGTAATAGGAAcatattttccttttgttttaaaggGTCAGATAAACCAAACCACAAAGCTGCAAAGCTATGTTCCTGAAAGCTAGGTTTGCATATTTGGTGAGTAATGTCTTGTTGCAAAAAATTGGTTTAACGTCTGAACTTTGCAGTCAAATGTATGTGCAACATCTGAATTATCATACAttgaaaaaatagaaattagCTGCCTTTGTATAGATATGAACCACAGAGAGTCCACATTCATTAAATGCACATACTGTAGAGTATTTTAACGTTTTGTCATGTACGTGTTTCAGTTCCACTGGGTTGCATTAATCAAGTTGTCTCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16607 True 541 lncRNA 0.35 1 11453571 11454111

Neighbor

gene id symbol gene type direction distance location
angptl4 LOC107585108,LOC107688469,LOC107680254,LOC107709905,LOC107550621,LOC107722496 coding upstream 14854 11433089 ~ 11438717 (+)
nr2f6a nr2f6a,LOC107722588,LOC107688466,LOC107585161,LOC107680251 coding upstream 85920 11360339 ~ 11367651 (+)
map4l si:dkey-77a20.5,LOC107722549,LOC107688456,LOC107676095,LOC107589807,LOC107718078 coding upstream 153536 11265291 ~ 11300035 (+)
LOC122361723 gyg1a,LOC107550614,LOC107709894,LOC107722604,LOC107688484,LOC107585020 coding upstream 314743 11137101 ~ 11138828 (+)
LOC122359360 ca8,LOC107693711,LOC107585586,LOC107691405,LOC107589840,LOC106599582 coding upstream 535833 10908283 ~ 10917738 (+)
pik3r2 pik3r2,LOC107688475,LOC107709897,LOC107550618,LOC107586063,LOC107722495 coding downstream 54601 11508712 ~ 11535896 (+)
ifi30 LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898 coding downstream 82854 11536965 ~ 11538807 (+)
mpv17l2 mpv17l2,LOC107585061,LOC107688480,LOC107709899,LOC107722522,LOC107680257,LOC107550616 coding downstream 84838 11538949 ~ 11540984 (+)
pde4ca pde4ca,LOC107688476,LOC107680260,LOC107709896,LOC107722623,LOC107585054 coding downstream 87434 11541545 ~ 11580423 (+)
rab3aa rab3aa,LOC107585037,LOC107722633,LOC107688479,LOC107709895,LOC107550615 coding downstream 127055 11581166 ~ 11585710 (+)
G11186 crsp7,LOC107688472,LOC107722610,LOC107585090,LOC107550620 non-coding upstream 4138 11448763 ~ 11449433 (+)
G11179 crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903 non-coding upstream 5010 11446512 ~ 11448561 (+)
G11177 NA non-coding upstream 44485 11408632 ~ 11409086 (+)
G11170 kcnn1a,LOC107722564,LOC107585128,LOC107718068,LOC106535681 non-coding upstream 60901 11343771 ~ 11392670 (+)
G11152 LOC107586083,LOC107688534,LOC107722517,LOC107589904 non-coding upstream 98355 11353866 ~ 11355216 (+)
G11190 NA non-coding downstream 147 11454258 ~ 11455408 (+)
G11191 NA non-coding downstream 2215 11456326 ~ 11456864 (+)
LOC122328936 NA non-coding downstream 155140 11609251 ~ 11613566 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding downstream 160130 11614241 ~ 11618863 (+)
G11419 NA non-coding downstream 646764 12100875 ~ 12101126 (+)
rps28 NA other upstream 9000 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 112460 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 115102 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 189337 11229760 ~ 11264234 (+)
LOC122359491 tesk2,si:dkeyp-75h12.2,LOC107585988,LOC107679327,LOC107602527,LOC107728975,LOC107714850,LOC107674209,LOC107562290,LOC107668671,LOC107588168,LOC107691921,LOC107753974 other upstream 317580 11119854 ~ 11135991 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other downstream 27993 11482104 ~ 11507704 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 453962 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 1169712 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1413818 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 2721253 14175364 ~ 14179615 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016386 NA non-coding NC_007113.7 CM002886.2 24568889 ~ 24572694 (-)