G11237 (LOC107722600,LOC107585244,LOC107688455)


Basic Information

Item Value
gene id G11237
gene name LOC107722600,LOC107585244,LOC107688455
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11165967 ~ 11167399 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16669
GTCCTCCAGGGCCACCTGGTGCTCCCGGCCATGGAAACCTTGTGATAACATATGAAAACAGTCAAGCCTTGATAAGAGAGACTGTTCAGACTGCAGAAGGGACTCTGGCATATGTTATAGACAAGAGTGAACTGTATTTCAGGGTACGAGGGGGCTGGAGGAAAGTTGAGCTAGGAGGGCTAATCCAAGTTCGTGAGGAAAGTTCCTCACCTGATTTGTCACAAGGCCTGAGCAGACCCAGCGACCGCAGTGTACCTAGAGTTCATAGCCAGGAGTTGAAGAGCTTCCTGCCAGACTACCATGTTTTCAACAGAACGCTCACTCAATGCCAGTGTTACACCTGGTGGC

Function

NR:

description
PREDICTED: collagen alpha-1(XVIII) chain-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16669 True 348 lncRNA 0.51 5 11165967 11167399

Neighbor

gene id symbol gene type direction distance location
LOC122359349 rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 6654 11155262 ~ 11159313 (-)
tox tox,LOC107718108,LOC107722616,LOC107585594 coding downstream 102994 10223331 ~ 11062973 (-)
col15a1b LOC107585244,LOC107722600,LOC107688455 coding downstream 276694 10864071 ~ 10889273 (-)
xirp1 LOC107722568,LOC107688450,LOC107585289,LOC107689412,LOC107718087,LOC107589818 coding downstream 439121 10710965 ~ 10726846 (-)
cdyl cdyl,LOC107689409,LOC107688447,LOC107722500 coding downstream 481312 10669470 ~ 10684655 (-)
slc12a7a LOC107722598,LOC107585218,LOC107589906,LOC107718080,LOC107688522 coding upstream 39045 11206444 ~ 11227249 (-)
myh7 vmhc,LOC107688458,LOC107722552,LOC107589804,LOC107680223 coding upstream 133693 11301092 ~ 11312718 (-)
ano8a LOC107718073,LOC107688459,LOC107589801,LOC107586092,LOC107722556,LOC107680225 coding upstream 173989 11341388 ~ 11350664 (-)
plvapa LOC107688534,LOC107722517,LOC107586083 coding upstream 186034 11353433 ~ 11356400 (-)
zgc:154006 LOC107722587,LOC107688535,LOC107585150,LOC107680250,LOC107718071,LOC107688536,LOC107722589 coding upstream 200171 11367570 ~ 11377879 (-)
G11234 NA non-coding downstream 15463 11147248 ~ 11150504 (-)
LOC122359521 LOC107674200,LOC107602529,LOC107729365,LOC107584650,LOC107679329 non-coding downstream 45180 11116997 ~ 11120787 (-)
LOC122359508 NA non-coding downstream 61375 11101522 ~ 11104592 (-)
G11118 NA non-coding downstream 187687 10952927 ~ 10978280 (-)
G11115 NA non-coding downstream 247278 10916071 ~ 10918689 (-)
LOC122359499 LOC107689414,LOC107722600,LOC107585244,LOC107688455 non-coding upstream 504 11167903 ~ 11170232 (-)
G11246 NA non-coding upstream 125816 11293215 ~ 11300016 (-)
G11263 NA non-coding upstream 255271 11422670 ~ 11423431 (-)
LOC122328878 NA non-coding upstream 272603 11440002 ~ 11440899 (-)
G11280 NA non-coding upstream 286859 11454258 ~ 11455403 (-)
LOC122359462 NA other downstream 263342 10897549 ~ 10902625 (-)
LOC122359216 tgfbr1a,LOC107688454,LOC107585257,LOC107722631,LOC107589809,LOC107718081,LOC107689415 other downstream 304372 10767974 ~ 10861595 (-)
G11105 LOC107688455,LOC107585244,LOC107722600 other downstream 362679 10800716 ~ 10803288 (-)
G11102 tgfbr1a,LOC107585257,LOC107722631,LOC107688454,LOC107689415,LOC107718081 other downstream 401076 10758028 ~ 10764891 (-)
fbxl7 fbxl7,LOC107718179,LOC107689422,LOC107688519,LOC107589836,LOC107722558,LOC107585539 other downstream 744492 10392682 ~ 10421475 (-)
trnau1apb LOC107688461,LOC107585172,LOC107722553,LOC107680226,LOC107589802,LOC107718075,LOC102202587 other upstream 168319 11335718 ~ 11339611 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other upstream 211844 11379243 ~ 11405700 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other upstream 273591 11440990 ~ 11445113 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other upstream 279690 11447089 ~ 11453203 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other upstream 408992 11576391 ~ 11577516 (-)

Expression


Co-expression Network