G11429


Basic Information

Item Value
gene id G11429
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12035009 ~ 12036429 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU16955
GTGATACCTTGGCATGTCCATGCTTGCCAGTCTTGGAGGTAGACATCTCCACAATCTTGCAGGGACGGCCCTTAAGCACCACAAAGCCGTTCTTACGCAGAGCACTGCACTGCATGGGGAAGGTCAGGGAAGCCCCAGCATCTCCACTGGTGAAGTCAGTATCAAGATCAGCCATGATGGGTGAAGTGGAAAGGATTCCCAGACGACGTGATCACACAATCGACCGCTTCAGGACACCGTCTTCAAACGACAAATCCTCTTTCCCGAGCTGCGTCCACCCACTGTACTGTATACAGAGGATTCGTCTAGAAATGTTGCGATGCTGGAGCAGAGAACATTGAAAACGCCAGTCATTCCCTTCCAACAAAAGACGGAGAGATCTGCGCATGCGCGTGCACCTTTACTGCAACGAGATTCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16955 True 420 lncRNA 0.52 2 12035009 12036429

Neighbor

gene id symbol gene type direction distance location
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding downstream 131051 11901080 ~ 11903958 (-)
nceh1a nceh1a,LOC107709885,LOC107722613,LOC107688490,LOC107584973,LOC107550609,LOC107680241 coding downstream 340531 11691551 ~ 11694478 (-)
pccb pccb,LOC107688488,LOC107722577,LOC107709888,LOC107680238,LOC106574468 coding downstream 349950 11679913 ~ 11685059 (-)
slc35g2a slc35g2a,LOC107709891,LOC107550608,LOC107680231,LOC107586575,LOC107688541,LOC107722521 coding downstream 403209 11628145 ~ 11631800 (-)
nck1a nck1a,LOC107688485,LOC107585026,LOC107722651,LOC107709892,LOC107550612,LOC107680266 coding downstream 410905 11615823 ~ 11624104 (-)
cldn11a cldn11a,LOC107586547,LOC107732506,LOC107550596 coding upstream 55936 12092365 ~ 12094581 (-)
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding upstream 225487 12261916 ~ 12266122 (-)
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding upstream 230656 12267085 ~ 12270472 (-)
best4 best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543 coding upstream 245653 12282082 ~ 12286011 (-)
si:ch211-106k21.5 si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518 coding upstream 250996 12287425 ~ 12292955 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 1929 11943133 ~ 12033080 (-)
G11426 NA non-coding downstream 3284 12028135 ~ 12031725 (-)
G11366 NA non-coding downstream 215210 11817020 ~ 11819799 (-)
G11350 NA non-coding downstream 252608 11780111 ~ 11782401 (-)
LOC122361822 NA non-coding downstream 381157 11650743 ~ 11653852 (-)
G11549 NA non-coding upstream 235314 12271743 ~ 12272390 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding upstream 243329 12279758 ~ 12281210 (-)
G11565 NA non-coding upstream 302847 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 316050 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 325222 12361651 ~ 12366865 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 420071 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 457493 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 581806 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 589896 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 629309 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 753095 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1278800 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1517344 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2542566 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 3084158 15120587 ~ 15127491 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G241604 NA non-coding CI01000055 null 5692676 ~ 5692929 (-)
eurasian perch (Perca fluviatilis) G202395 NA non-coding NC_053131.1 CM020928.1 13398815 ~ 13400682 (+)