G11549


Basic Information

Item Value
gene id G11549
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12271743 ~ 12272390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17110
CGCACAGCGACCTCGTCCGGCTCCGCCACCTTGGGTTTGGCACCCATGTGCAAGGAGTTTTCCACATCCACCACCTGCTCCCACCTACAAAGCCATTCAGGAAAAAAACCTATTACACGGCTTATGGTCGTATCCAAACAGCTGCTGCTGGCGGCTGACAGTGTCGGGAGATTCCACTGGCACAAGCCTGTCTCCACCTTCTGTGTGTTtacacaccaggatccagcccTCCTCGATGTCCAGGCCGGCACGATACTCCTCCAGCTGCTCCTGCCATGGCCAGAACAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17110 True 291 lncRNA 0.57 2 12271743 12272390

Neighbor

gene id symbol gene type direction distance location
acadm acadm,LOC107688505,LOC107584839,LOC107674066,LOC107602542 coding downstream 1271 12267085 ~ 12270472 (-)
rabggtb rabggtb,LOC107584851,LOC107732517,LOC107576861 coding downstream 5621 12261916 ~ 12266122 (-)
cldn11a cldn11a,LOC107586547,LOC107732506,LOC107550596 coding downstream 177162 12092365 ~ 12094581 (-)
ghsra LOC107586567,LOC107722546,LOC107688542,LOC107732507,LOC107550603,LOC107680230 coding downstream 367785 11901080 ~ 11903958 (-)
nceh1a nceh1a,LOC107709885,LOC107722613,LOC107688490,LOC107584973,LOC107550609,LOC107680241 coding downstream 577265 11691551 ~ 11694478 (-)
best4 best4,LOC107729385,LOC107674419,LOC107714835,LOC107602543 coding upstream 9692 12282082 ~ 12286011 (-)
si:ch211-106k21.5 si:ch211-106k21.5,LOC107688547,LOC107729472,LOC107714834,LOC107674086,LOC107602518 coding upstream 15035 12287425 ~ 12292955 (-)
LOC122328397 LOC107688509,LOC107729466,LOC107714866,LOC107674362,LOC107602512 coding upstream 20958 12293348 ~ 12319104 (-)
ndc1 ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508 coding upstream 47280 12319670 ~ 12327438 (-)
zgc:113691 zgc:113691,LOC107714832,LOC107729460,LOC107586526,LOC107674428,LOC107688550,LOC107688549 coding upstream 55402 12327792 ~ 12329094 (-)
G11429 NA non-coding downstream 235314 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 238663 11943133 ~ 12033080 (-)
G11426 NA non-coding downstream 240018 12028135 ~ 12031725 (-)
G11366 NA non-coding downstream 451944 11817020 ~ 11819799 (-)
G11350 NA non-coding downstream 489342 11780111 ~ 11782401 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding upstream 7368 12279758 ~ 12281210 (-)
G11565 NA non-coding upstream 66886 12339276 ~ 12359064 (-)
G11572 NA non-coding upstream 80089 12352479 ~ 12353826 (-)
G11561 NA non-coding upstream 89261 12361651 ~ 12366865 (-)
G11559 NA non-coding upstream 100182 12372572 ~ 12374335 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 656805 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 694227 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 818540 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 826630 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 866043 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 517134 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 1042839 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1281383 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2306605 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2848197 15120587 ~ 15127491 (-)

Expression


Co-expression Network