G11572


Basic Information

Item Value
gene id G11572
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12352479 ~ 12353826 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17156
CTAACATAGCCTATAGCTAAACTCAAGGACGCAGGGATTGAACATCTGTCTGCAGGGTGACGTCACGCGCCTCCCATGCGATGTAGCGCTCGGCGCAGTTTCCATATTAATATGTCGCTGGCTCGACATGTATATGAAAGTGCGCTTTAAAATTAAGCAGCGACGCGAACGGGCTTGCGTGGCTTCGCGGAGgTTACAGGGATGGAAGGCTGCATTTGATGCCTCGGCTGTGCAGGCATTCTGAATGCACTGCCCCTGGCTGTGTGCTTTGTCTGTCAGAACACAGGCTTCCAGTACGGCTCGCCGGATAAGGAAACATTCAGCCTTATTTAACCAGGATGAGATTCATATCTAAATAGGCCTTAAGTGAggcttttaaagaaatacacCTGTTGGAAGAATACGATTTGTCCGGCCTGCGGTGCATAGACTATCAAGTCACGATGCACATCCTGAAtctatgatttatatttttataaggCCCTCAGAGTCTCTCTCTGCACTTTAGGCTCTCGCTGTACGTGTTCACAGTGGACCTTGatttaatgtatttcaattAAGGCACGCGGTGAATGCCAAGAGCGAAGCCACATATCCTTCAACAAATGCAAAGCTGCCTGTTTATTACTATGCTATTGctgttttaatttgtgtgtaaatgcattaatgttatATTCACAGTACACTCTTATATTTACAATACTGTGTAGTGTACTGTTCATAACATTTCACGGGTAGTGAAAATATATGGTGACTGCTAAAGCCAACTAAGAAGCTCTTTGGTCATCTCTGAACAACTTTTTTATTGAaccaatttttctttttgcaaacaaactgttttttcaatacaaatattacgTGAAGAtcatcgtttttatttatttctatctggttactgacatttttatgttttttagttgtgtaataataaaatccattgaaaatattttttttgcattgctgtttttgactgttttttgcactataaaaatatagtttcaAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17156 True 1003 lncRNA 0.40 2 12352479 12353826

Neighbor

gene id symbol gene type direction distance location
LOC122356975 LOC107688511,LOC107674121,LOC107584783,LOC107602536,LOC107729248,LOC107714859 coding downstream 1168 12341195 ~ 12351311 (-)
tmem59 tmem59,LOC107688510,LOC107584797,LOC107729271,LOC107674113,LOC107714860,LOC107602538 coding downstream 11702 12337674 ~ 12340777 (-)
yipf1 yipf1,LOC107688551,LOC107586505,LOC107729441,LOC107602540,LOC107714864,LOC107674435 coding downstream 18011 12329751 ~ 12334468 (-)
zgc:113691 zgc:113691,LOC107714832,LOC107729460,LOC107586526,LOC107674428,LOC107688550,LOC107688549 coding downstream 23385 12327792 ~ 12329094 (-)
ndc1 ndc1,LOC107674092,LOC107602511,LOC107584806,LOC107688508 coding downstream 25041 12319670 ~ 12327438 (-)
si:dkey-181m9.8 LOC107584711,LOC107714829,LOC107729152,LOC107674166,LOC107602534 coding upstream 27315 12381141 ~ 12389981 (-)
dsela dsela,LOC107679326,LOC107584692,LOC107728919,LOC107714854,LOC107674195 coding upstream 262214 12616040 ~ 12621416 (-)
tmx3a tmx3,LOC107584650,LOC107679329,LOC107602529,LOC107674200,LOC107729365 coding upstream 267982 12621808 ~ 12630962 (-)
toe1 toe1,LOC107729020,LOC107679328,LOC107714851,LOC107674219 coding upstream 296745 12650571 ~ 12653462 (-)
urod urod,LOC107729049,LOC107679325,LOC107674254,LOC107714848 coding upstream 391986 12745812 ~ 12753141 (-)
G11551 LOC107657932,LOC107700454,LOC107585903,LOC105895027,LOC107549844,LOC107743876,LOC107710907,LOC107579213 non-coding downstream 71269 12279758 ~ 12281210 (-)
G11549 NA non-coding downstream 80089 12271743 ~ 12272390 (-)
G11429 NA non-coding downstream 316050 12035009 ~ 12036429 (-)
G11425 slc2a2,LOC107586013,LOC107722632,LOC107680265,LOC107550598 non-coding downstream 319399 11943133 ~ 12033080 (-)
G11561 NA non-coding upstream 7825 12361651 ~ 12366865 (-)
G11559 NA non-coding upstream 18746 12372572 ~ 12374335 (-)
G11568 NA non-coding upstream 20825 12374651 ~ 12439008 (-)
G11576 NA non-coding upstream 133228 12487054 ~ 12488085 (-)
G11591 NA non-coding upstream 194379 12548205 ~ 12548515 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 737541 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 774963 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 899276 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 907366 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 946779 11379243 ~ 11405700 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other upstream 435698 12789524 ~ 12838093 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 961403 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 1199947 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 2225169 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2766761 15120587 ~ 15127491 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016421 dre-mir-124-1 non-coding NC_007113.7 CM002886.2 26645317 ~ 26645398 (-)
grasscarp (Ctenopharyngodon idella) G28989 NA non-coding CI01000004 null 8971829 ~ 8973638 (+)
rainbow trout (Oncorhynchus mykiss) G1261814 NA non-coding NC_048579.1 CM023233.2 15523786 ~ 15529777 (+)
eurasian perch (Perca fluviatilis) G24344 NA non-coding NC_053113.1 CM020910.1 46855797 ~ 46855999 (-)