xkr4 (xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249)


Basic Information

Item Value
gene id xkr4
gene name xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 12789524 ~ 12838093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17312
GGGGGATTTACAATGGATGCACAGATGCTGTAAGATAATACCAAACAGATTTATAAATAGCAACACTGGTGCATTTGCATATCATACACCAAACGACACCGGATGTGCACAGAGATCACAGGACGGGGTGACGAAGACCGCGCTCATGCTGACATTTGATCTTTGTCACACACAAGATATTGTCTCCCAAAAGATCATGGATGGGTGGTTTACTGAGCACGAGTGCATTAAAACGGTTTTACCAACACTGAATCCATTGGAATATTCAGTACTATTGTGAATAAGAAAAtctcctataaaaaaaaaacagccattatTTCCACAATGATCACATCTGACTACTTGTTAGATTTGAACAGCCTTTATGTAATGAATTAGTAAATCTATACATTTCAGGAATGTTATACAATCTTGATGAATTCTGAAAGACCTGTATGCTTTGTTGCCTGAATCAAATCATTAGCAGTTGCAtacttataatataaatgtaaataaatgttataataagcTCCGAGAGCTGAACAAACCAATATTAACCGATTTTTAAATAGACAGCAGTTCACCTCTGAGAGTTAATACAGAGATGTTAGACTAAAGCTACGTATTCAACATCAAACAACAAATATTCAAGCATGTATctcttattgttattattaagtGTGCTTACAAAATCCCAGAAATCACAGTATGCACAATTTTCCTTCGGATAGATAAATATAATCGGTTTCCAGGACAAtgctatattttttaaaaggacatttaaaaagaaagaaaaaaaactaaacaaaggcTTTGTGGAAACTATTTTGGCAGTGGTcctttgaataaaatcaaagtGTGCAAATAAGTTATAGATTTAAACAcacgctatatatatatatatatatatttaaaaaagttcacaaaaacacTCTTCGACATGCACAAGACTACATGTAAAAAGACGTTACAAAGACACGCACCATTATTTGATATGCAACATTGCGATATATGCCGATACGTCCATTACAGTGTCAGTAACGTTTCCtaattttataatgtaacaatattataaaatctCCAGTATTCAGTTAAATTATGcttaaagcatatttatttgttcagtcTGAGAGAAGGCAAGTGTGCTAATCTTCTTTGCGCTCCCTTTGGAATCGCTCTAGAAGAGCTCGGAGGATGTTTCCAGGTATCTTCTGGTGTTTGTCGATAAGTGCTTGAACTGCCTGTTGCACCTGAGCAGATGGGTTCGGTGgaagaaaaacactaaatatgaGGACTGACTCGACAGAGGCATAAACTGAACATGTGACATATTCACTGTCTACTTGCGGTGCAGTAGCTGTATTTGCTGACACTGTGTTCTGCACATTGgccataattttattcattacgCACATGCGAGATGGGgcccatatttatttaaaataataaaaatgtcct
>XM_043264396.1
GCAGTAGCCGTGCATGTGCTGTGAAAACCCGCCACAATGGACGCTTCCCTATTTACTTTTGACGCGCCGCTCGCGACCGTTGGACAGCGTGCTCGGTTTAGGGTGGAATTCAAAACTGCACGTTTACAAATGCCATAGCAACCGAGTGGTCGCCTCTTTAACGCACCGCTGCCGTAGACACAATTTTTACGCGTGAATGTGGAGTTAGCAGAAGGCTGTGCTGCAATAGCTGGATACTGAGCACCACGATGTGCTCCTGAAGAAGAGTTGCAAAGCAATGATGTCATAGTTTTAAGTAGGAGCCACGGGAGAGCATATGGTTCGTACCCGCTACCGAAAGGAAGTGTTGCTTTGTTATGAGCAGGCGGCGCTGTAGCTGGCGGAAGAGGAGGTCGCCCAGCCCAGTGTCTCTTCGCCTGGAATAGAGAAGCCTAGGAGAAGACGCGAAAACGGAGAGAAGACAAAGCTGCTACAATGGCCGCGAAATCCGACGGGGTGCTAAAGATGAAGAAGAGCGATGTAGCATTTACGCCTTTGCAGAATTCGGATCACTCGGGTTCGGTTCAAGGGCTCGCTCCGGGATCGCAGCCGGATTCTGGAACCGGAGAGGCGGACTTCGTCAACGGGGAGTCGCGGTGCTGTGGCTCAAATTCGACATGTCTCCGCCTCGGCAGGGAGCAGCAGAAATACACGGTCTGGGACTGTCTGTGGATCCTCGCCGCAGTGGCGGTGTATTTCGCGGATGTGGGCACTGATATTTGGCTTTCGGTCGACTATTACATCCGCAGCGACTACTGGTGGTTCGGGCTTACGCTGTTTTTTGTGGTGCTCGGCTCGTTCTCCGTGCAGGTCTTCAGTTTCCGCTGGTTCGTCCATGATTTCAGCACCGAGGAGAGCtccggcggcggcggcggcggtgGCGGCGCGGCGAGCTGCTCCCACATGGACGGGAAGCTGCTCAGCTGCTCCGCTTCGCACGGAGACGTTGGAGCCCACCCGTCTACGCCTCAAAGACAGGCGTCCACGGCGAGCAAGAGCAACACCACGAGCAACAGCAGCAACAGCGCTACCGCAGCCCGGACTAGTAAGACACGCTCAGCGTCCTGTTCCCTCTGTATCTGGCTGTTGCAGTCCGTCATTCACATCTTACAGCTCGGACAAATCTGGAGGTACTTCCACACGATCTATCTGGGCATCAGGAGCAGGCAGAGCGGAGAGAATGACCGCTGGAGGTTCTACTGGAGGATGGTGTACGAGTATGCTGACGTCAGCATGCTCCATCTTCTGGCCACGTTCCTGGAGAGCGCACCTCAGCTGGTGCTCCAGCTCTGTATCATCATACAGACTCACAAACTCCAGGCTGTGCAAGGGATGACAGCGGCTGCTTCTCTAGTGTCACTGGCCTGGGCTCTGGCCTCCTACCAGAAAGCCTTGCGTGATTCCCGCGATGATAAGAAACCCATCAGCTACCTTGCTGTCATCATCCAGTTCTGCTGGCACTTCTTCACCATCGCAGCTCGTGTAGTGACCTTCGCTCTCTTCGCCTCCGTGTTTCAGCTCTACTTCGGCATCTTCATCGTTCTGCACTGGTGCATCATGACCTTCTGGATCGTACACTGCGAGACCGAATTCTGCATCACCAAGTGGGAGGAGATCGTCTTTGACATGGTGGTGGGAATCATTTACATCTTCAGTTGGTTTAACGTGAAGGAGGGACGCACCCGCTGCCGTCTCTTCATCTACTACTTCATGATCCTGCTGGAGAACACAGCCCTGAGCGCGTTGTGGTACCTGTACCGTTCGCCGCACAGCACAGACGCCTTCGCCGTGCCCGCTCTGTGCGTCATCTTCTCCAGCTTCTTCACTGGTATCGTCTTCATGCTCATGTACTACGCTTTCTTCCATCCCAACGGGCCACGCTTTGGCCGCTCGGCCAGCCTGGTCCAGCTCGAAGACCCTACAGCTACCTTCACCCTCCCCCCCGAGGACGCCACCAACTCCTTGCGCTCCAACCGCGGAGGTACTCTAGCCAGGGACGCTGACCGCGAGGCCAAGTACAGCGAGAGGGACGGTTGCGTACCAGTCTTTCAGGTGCGGCCCACCGCACCCTCCACACCTTCCTCTCGTGCCCCGCGCTTGGAGGAGACAGTAATCAAAATAGACTTGTGCAGGAACCGCTACCCTGCCTGGGAGAGGCACGTACTAGACAGGAGTATACGTAAAGCCATCCTGGCCATCGACTCGTCTCCGACCCCGCCACGCCTCCAATATAAAGACGACACATTGGTTCAAGAGCGTCTGGAGTACGAGACCACCTTGTAGCCTGCGCTGtggaaacacacaaacattaatgcATTACTGTCCACTTGAATAAACAGCAGGACTGTGGCAATAACGTTCTTTGCATACATAGCATCTAGCCATGATGTTGATTGTCATGGACAAGCAAATAAGGCACAACATATTTGTGGACGAATGAAATAATCAATCTTTTTTAAGCCGTTCTCTcgttgctttttattttttattacttctgTCTTGTCAGGGAATATCTGGGTTTCTAAAAGTCATTGCACTGGCTGATACAGACCACAAACCCCTCGGTCCTCCTCAGTGTTGTACAGACCTTCATTCCCGGAGTCGATTGTCCTCGAGCCTACGTCTCCAAGAGGACATCCAGAACACTTCATAGTTTGTCTCTTGcagcaaatgcaaaacaaaggcCTTTCCCTTTGAAACCAAGCATCCAGTGCACACGAACCAACCGACTACCCACCGCACTGGAGAAACAGTGGTCCAAATATCATATTGATggtacatgaataaaaaaaaattgctgattAGACTCGAGATGTCCTTGTTTAGGGTGCTGTAACCTATTAGTAGTGTTTCATCAGCAGTTCTGTACCAGTGCCAAATGCTCCACTCGCACTGACTCCATGCTGAACTGTGGCTCGACCACAAACTGTATATACAAACAGGGCAGCATTTCAACCATCTACTTGAATCCTGTACAAAGAAAAAAGACGAGAAAAGAAAGTATGCGATCATCACAAGAGTCCAAGCCACTTGGGACAACAAAACAGGGAGAACACACACTCGTTTTCTTCTTCTGGAGAAGACAATAGGCCAAGAAAACACTTCCTGGCAGCTCCCTTTGGCGATCCGGCCTCATTCACCTCACCGCTGTGGGCTAACAAGGATCCGTTTGGTTCACAGCAAAGTGGGGGGCAAAGACCATCACAGTTCACACAGTGTCCGCCAAACTGTACTCGACAGAACCTGGATGCACTTCATCTTCTAGGTTAAAGATACAGTGTTCTTCTAGGCTGGGTCAGGGTTTGGTGCGTCTGTATCGGTACAGTAAAGCGAGTTAACGGCACATGAATAGACAGTAAATGGTGTCACATCTCATCACATCCGGAAAGCCGGAGAAGTGTGATCAAGACTTTCTCCACCAGGCTCTTCAAGTGCCGACTCACGGTCTACAAATCAAAGTGTCAGGGAGAAGTAGTCTGTGACAAAGTACAGACTAGCTAATGATGCTCCTGGCCCTATGGTTCAACTAATCACAATTGCCTAAAAGAGCACTGTATCTTTAATTAGCCAAAAGCATCCTTTATATATGAAAGTGTTGGAGTTTTAAACTTTCCGTTCAGTTGCAAGTGCTTCTTTGTGTCTTTATGTCAAATATATGAAGGAGGTGAgggcagaaaaataaaaaaataaatagaaaacaagcACAAAACTTGTCACAGGAAGGAGTCTCAGCACAATGAAGGATTACTTTACACTTGCGTTGAGAGACAAGTTGAAATTTTACTGCGACAGAAGCTAGATGTGCCTGTTGTGGATAGCTTGCGATTTTGAAagtgtgggaaaaaaatgttttatgtgtaaCTTCTTTTATACtctattttctttgtttttcttttggggCTTTTGATGGATTTTGAACATGTGTCTTACAAAATGGTTGATTTTAAGGTGCACATTATTTTGCTTAATGCCATTTAACTGTGTGACTGATATAGGACGGTTAGATGCGTTTTGCTTCAGTTGGTCATATCTGAACTGTAATTTGTAGCTTTGAAACACTCCTGAGGTGTTGTAACGTCCTACTATTGGTGGCAAATGAACTGAAAGCATAGTTGTTTAGCCTGCAGCAATCTGCACGTTTGCAGATGAAGATCCTAATTGtgttgcaaataaaaatatgaaaatagaacagaaaacattatttagatGAGATCGTACGAATCTATAACCAGTACCACAGTAAAACGTAGACCtgtatattttagcttttttgctACTTTACTATCTCGTCAGCATTTTTTCCCCAATGTGTCTTATACTTTCATTTCTCTGTGTGAAGGATGATGACGATACTTTGTCTCTTGGCAAAATTTTCCAAACAGCCCTCTAAAAGAGTCCCCTGTAGTCAGAGCACAAAAAAACTTGTGTTAGCACACTAATTAGCCAATTTTCAGATTAAAATGGCTGCACCACCTACACAAGCCCATTTTTGAAGGAAGACAAGTGATGTATCGCACACCTCTGCGATATTATACGTATCCATCATTTTCAAAAGCATCCTACGTTTTTTCGCTTTCCcataaatactatatttttgtttaggCTACCCCAAGCACACTGCATTTTGGTTCAATGGATTAAGATGAGCATCCTAATGGCAACACTTGCTGTGTCTGTGAGTTTTGGTGACGTTCTACTTTATCAGGTGCAAGgcctcaatttttttttaatgttcaaatatGACATGAATTTCTAACACTCAATGCAATGCGATGTGTTCAGCACATGCAGAACGAATCAAGGTCTTTATACAAAAGGCTGTGTAGATGTTGGGAGATGCTGAATAGCCTGTTTTGATGGCGTATTTTTCGcaattattaatgataatactaTTGGTCCAAACAATCGGAGAGGTCCTGCGTACGTCACAAGAAAGACGTCAGCCGTTTTCATTGGAAAACGATAAGGTCAGGGGAGCAAATGAAACACGTGGAGTAAGATCTTTAACACGTATTTGGAAAATAGAGTGTGAATTTTCACTGTAATAATAATCTGACAGGGGCTTGAAATTTAGCCTAACACGTGCATCAAGAAGCTATTCACGCATTTTACGTGCGTAGGTAAACCTACGTCTTTGCATTTAAGCTAATCATAACGTTACAGCTAAActatgtatctttattttgcactCGTAGTTATATTTTTCTATCTGGGTTTTTATCAGTAAACCTAGAGATATCATATTCAACCATTTCTTcgctctggaaaaaaaaaaaaaaacttcatacCTGTAACCTACCTCAAAGCGGTATTTTAAACAGACCACTCTCCAGCTCTAGTTATTGATATGAAGGAATTTATTGCGATGCAGTCCCGGAGGATGAGCGGAGGAGTTGAAGGCTGCTCTGTTTATTACCGGTACATCAGTAGAGCCGAGTTCAAAAGCAGGACTTATTTTACAACTATTCACAGCAGGAGAACATTCAATTCATGCAAGCTGATTCTGTTTTATTTGCCTTAAACGACGCTCGCCTTTTTGTGGATTCATTATCCGTAAGCGACATTTTCTGCTTGTTtcttttggtttagtttttagtCATGCACATGATGCTCCGGTTGCTGTCATGCTAGTATGACGACGTTGCATTATTGATTAGCGTATTTACTGTGCTCCTTGTTGGAAAAATCCAGTAGgctatgctggttaggtatgttttgaagcatagCTGCTGGTTTAGGCTGGTCGTGTGCTGGTCCTGGAAAGGAGCAGTCGCTTAGGACCAACTTAAATCGGCTCAAACCAgctgccatgcttcaaaacacattttctttttttcaatagGGCATATAACGCAAGCAGAAGAAAGCAGACTGAAACGAAATTGCATATGCAGACAAACAATCAAAATGACGACCTAGATAGTCAGGAGTCACGGGCCGTACAGTTACAGGATTGTGAGCATTTCGAATCAGTTAGCAAACACACGAAAGACTCGGAGAGAGCTGCGGTGAAATGTGGCACTTTTTCCGagaatctttttttgttgttgtcgaATAAACAAATCGATCCTCCCTCGCACCACGTAGACATAGATACCTAGATAATCTAGAATGTCATAAAtgggggttaaaaaaaaaaaaaaagaaatttacatttagataAACGATAATCGGTGGTTATTTCTAAAGCACGATATTAATTCAAGCACAGTAATTGAATGAACTCGGTGGCGTTCAGTTCGGCTTTCAGAAATGATGTACAGACTTTACTGGTATTTCAGTTGCAACGAAAGTTCCATAGTGACTTGCAAAAGgctatttaactgtaaataaatgtatgcaaatgtaCATGTGTAAAAGAACATTCCTCTCTGAGTCCTGGTCGTGAAGGGTGTCTATTGACTAGAGATCGGCAGTTACATATGACATAATACAGATAAAACTAGTGTGGTGTATGTGAtgtaataaatgacataaaaaaaaagcaaaaaaacacaacaaaaaaatgtttattattggtCTCTTAAGTAAGTTGTATCGTGTGATGAAAGTCTGAAGTGCGTAAAATGCATCAAATCTGTTATctgattttattgtaaattgaagagtaagaacaaaaagaacgttacatttttgtacatattggatttttgtaaatttttatttgattctaATGCAACACAAAGTAccaaattcatttaataaagtaCACTGTGGTCATTTTATTAGACTTACTGGCAATCTTCTTTCGGATTCGCAGTTAATGTGTGAAAAaggttaatttaaaattttagtatGTCGGTAACTGTTTCAGCGTTGGGGGGAAAAAGCATTGGTGATGAGCAAATCTGCTTTTTTTGTCAGAAGCGGTCTATCACAAATGCAAGGTTTGGTGATTAGTTTGTCTGAATATGTATTCTCACACCTCCTATGATTTAAGGTTTTACACCTTAATTAGAAGAGACTCCTGGAGAGGCTGAAAGAAAATTAGGAGCACATGTATAATGCAAGGAGAGATCATGAATAATAAAgattttcttccaaaaaatacttttatttttatttttccaagtgATTTTTCGGGGGGGGGGATTTACAATGGATGCACAGATGCTGTAAGATAATACCAAACAGATTTATAAATAGCAACACTGGTGCATTTGCATATCATACACCAAACGACACCGGATGTGCACAGAGATCACAGGACGGGGTGACGAAGACCGCGCTCATGCTGACATTTGATCTTTGTCACACACAAGATATTGTCTCCCAAAAGATCATGGATGGGTGGTTTACTGAGCACGAGTGCATTAAAACGGTTTTACCAACACTGAATCCATTGGAATATTCAGTACTATTGTGAATAAGAAAAtctcctataaaaaaaaaacagccattatTTCCACAATGATCACATCTGACTACTTGTTAGATTTGAACAGCCTTTATGTAATGAATTAGTAAATCTATACATTTCAGGAATGTTATACAATCTTGATGAATTCTGAAAGACCTGTATGCTTTGTTGCCTGAATCAAATCATTAGCAGTTGCAtacttataatataaatgtaaataaatgttataataagcTCCGAGAGCTGAACAAACCAATATTAACCGATTTTTAAATAGACAGCAGTTCACCTCTGAGAGTTAATACAGAGATGTTAGACTAAAGCTACGTATTCAACATCAAACAACAAATATTCAAGCATGTATctcttattgttattattaagtGTGCTTACAAAATCCCAGAAATCACAGTATGCACAATTTTCCTTCGGATAGATAAATATAATCGGTTTCCAGGACAAtgctatattttttaaaaggacatttaaaaagaaagaaaaaaaactaaacaaaggcTTTGTGGAAACTATTTTGGCAGTGGTcctttgaataaaatcaaagtGTGCAAATAAGTTATAGATTTAAACAcacgctatatatatatatatatatat

Function

symbol description
xkr4 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in telencephalon.

NR:

description
PREDICTED: XK-related protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17312 False 1437 lncRNA 0.48 2 12789524 12791035
XM_043264396.1 True 8014 mRNA 0.43 3 12790147 12838093

Neighbor

gene id symbol gene type direction distance location
tgs1 tgs1,LOC107679334,LOC107714845 coding downstream 4510 12765155 ~ 12785014 (-)
lyn lyn,LOC107584583,LOC107602520,LOC107674289 coding downstream 24833 12753571 ~ 12764691 (-)
urod urod,LOC107729049,LOC107679325,LOC107674254,LOC107714848 coding downstream 36383 12745812 ~ 12753141 (-)
toe1 toe1,LOC107729020,LOC107679328,LOC107714851,LOC107674219 coding downstream 136062 12650571 ~ 12653462 (-)
tmx3a tmx3,LOC107584650,LOC107679329,LOC107602529,LOC107674200,LOC107729365 coding downstream 158562 12621808 ~ 12630962 (-)
LOC122360584 rnf31,LOC107728933,LOC107714842,LOC100334178 coding upstream 12341 12850434 ~ 12863713 (-)
gad3 zgc:163121,LOC107584517,LOC107674337,LOC107714838,LOC107567402,LOC108432257 coding upstream 40168 12878261 ~ 12889374 (-)
c2h5orf22 zgc:56556,LOC107667290,LOC107729038,LOC107586438,LOC107714825 coding upstream 74595 12912688 ~ 12920572 (-)
cdh6 cdh6,LOC107667294,LOC107728946,LOC107678945,LOC107584507,LOC107567409 coding upstream 110346 12948439 ~ 12976415 (-)
LOC122327000 cdh7,LOC107584702,LOC107729377,LOC107602530,LOC107674380,LOC108432272 coding upstream 697010 13535103 ~ 13552549 (-)
LOC122362470 NA non-coding downstream 89215 12696916 ~ 12700309 (-)
G11676 NA non-coding downstream 93845 12695480 ~ 12695679 (-)
G11669 sepp1b,LOC107729074,LOC107674235,LOC107679336 non-coding downstream 127652 12658294 ~ 12661872 (-)
G11668 NA non-coding downstream 131405 12657750 ~ 12658119 (-)
G11591 NA non-coding downstream 241009 12548205 ~ 12548515 (-)
G11722 NA non-coding upstream 235928 13074021 ~ 13090150 (-)
G11770 NA non-coding upstream 633605 13471698 ~ 13472397 (-)
G11792 NA non-coding upstream 856226 13694319 ~ 13701311 (-)
G11794 LOC101886882 non-coding upstream 910847 13748940 ~ 13792877 (-)
LOC122357571 NA non-coding upstream 1178252 14016345 ~ 14030265 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 1174586 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 1212008 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 1336321 11447089 ~ 11453203 (-)
cnn2 cnn2,LOC107585101,LOC107688471,LOC107709904,LOC107550622,LOC107680261 other downstream 1344411 11440990 ~ 11445113 (-)
kcnn1a LOC107722564,LOC107585128,LOC107718068,LOC107680246,LOC107589798 other downstream 1383824 11379243 ~ 11405700 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other upstream 477136 13315229 ~ 13470263 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other upstream 715680 13553773 ~ 13564365 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 1740902 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 2282494 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 2295878 15133971 ~ 15153989 (-)

Expression


Co-expression Network