LOC122328470 (ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524)


Basic Information

Item Value
gene id LOC122328470
gene name ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 13553773 ~ 13564365 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17467
CCCAAACATTCAAACAGcagtgtgttatatatattaaaaaaatattcaacctCAAGATGTGAATTAAataatgggtaacactttagacaTTGTACTAGCAGCAAGTGAATTAGTAACTAGATgccaactagcagtcattagagtattagtagaccgtctgcttaatatcttaaCAACAGTTAACTAAGTGTATGTTCatttattctactaaccctaaaccttccctaacagtctactctgagagttagtaggcCTTAGTGGACTTATATTTAGCAGAATTTTCTCCACGTCCAAGTCAAATAAAAGTATGCAAAAAGTTCCGTCCCACATTATCCACATTAAACAACCTCTGTTTGATCTCTGCTGCTTTTATTCAAACCTGTTACCATACTCACGCTACATTTACCCAGCATGCCTGAACACATTGGTTTAATAAGCTGTTACGAGAAGACCTGGTGTTGTTtgttccctccctctctctcctctcctctcctctcctctcctctcctcctcctcgggGGCCGGGCTCCGCTCCGCTCAGGTCTGTCCATGCAGACGATGCCTGGCGCTCTGGGACCTCTCACCATCCCTTCCTCAGCAATGACGGGACGGATGACCATCCACGGCATGGCCCCCACCGCCATCCACTCTGTGCTCCTCGTCTCCAACCTCAACCCCGACAGCATATCACCACACGGGCTCTTCATCTTATTCGGAGTGTACGGAGATGTTCACCGAGTCAAGATCCTGTTCAACAAGAAAGAGAATGCCTTAATACAGATGGCAGACGCCACGCAAGCCCAGCTCGCGATGAGCCATTTGAACGGTCAGCGTCTGTATGGTAAGGTGATCCGTGTGACCATCTCGAAGCACCAGACGGTGCAGCTCCCCAGAGAGGGTCAGGAGGACCAGGGCCTGACCAAAGACTTCAGCGGGAGCCCGTTGCACCGCTTCAAAAAGCCCGGCTCCAAGAACTTCCAGAACATCTTCCCTCCCTCCGCCACCCTGCACCTCTCAAATATCCCTCCCTCCACTACGGATGACTTTCTGAAAGATCTGTTTGCCAGCTCTGGATACACAGTCAAGGCCTTCAAGTTTTTCCA
>TU17469
CCCAAACATTCAAACAGcagtgtgttatatatattaaaaaaatattcaacctCAAGATGTGAATTAAataatgggtaacactttagacaTTGTACTAGCAGCAAGTGAATTAGTAACTAGATgccaactagcagtcattagagtattagtagaccgtctgcttaatatcttaaCAACAGTTAACTAAGTGTATGTTCatttattctactaaccctaaaccttccctaacagtctactctgagagttagtaggcCTTAGTGGACTTATATTTAGCAGAATTTTCTCCACGTCCAAGTCAAATAAAAGTATGCAAAAAGTTCCGTCCCACATTATCCACATTAAACAACCTCTGTTTGATCTCTGCTGCTTTTATTCAAACCTGTTACCATACTCACGCTACATTTACCCAGCATGCCTGAACACATTGGTTTAATAAGCTGTTACGAGAAGACCTGGTGTTGTTtgttccctccctctctctcctctcctctcctctcctctcctctcctcctcctcgggGGCCGGGCTCCGCTCCGCTCAGGTCTGTCCATGCAGACGATGCCTGGCGCTCTGGGACCTCTCACCATCCCTTCCTCAGCAATGACGGGACGGATGACCATCCACGGCATGGCCCCCACCGCCATCCACTCTGTGCTCCTCGTCTCCAACCTCAACCCCGACAGCATATCACCACACGGGCTCTTCATCTTATTCGGTAAGGACGAATTTATTACTCCTCCGGATCAGATGCGCACACGGCTGTTTTTATGAAGGCGGCGGAGGATCGAAGCTGAGCGATGAGGCCATTtccttacaaacacacagtcgGGAGATCACTTGCAGATTGCGGCCCGCCGTATGAATGCTGAAGTTCTCCCATGCACGCTCACGATTGCGCGCCGTTGTTATTGCGCTTACAATTTAATAACAGTCAACATCAGAGACCGACCTCGGCGTGAGCGATCTCCTTTAAGATGCGAGGAGTTGCCGCCCCCCTCTGCCTTCAGTAATAAAACGCCGAGATCCGCGGATAGCGTGTTCTTTGCTGTAAATAGCGTTCGCGCTTTGTTCGAGTCTAACATTTCACTTTTATCCCGGCAGGAGTGTACGGAGATGTTCACCGAGTCAAGATCCTGTTCAACAAGAAAGAGAATGCCTTAATACAGATGGCAGACGCCACGCAAGCCCAGCTCGCGATGAGCCATTTGAACGGTCAGCGTCTGTATGGTAAGGTGATCCGTGTGACCATCTCGAAGCACCAGACGGTGCAGCTCCCCAGAGAGGGTCAGGAGGACCAGGGCCTGACCAAAGACTTCAGCGGGAGCCCGTTGCACCGCTTCAAAAAGCCCGGCTCCAAGAACTTCCAGAACATCTTCCCTCCCTCCGCCACCCTGCACCTCTCAAATATCCCGTGAGTGACTGCTGCACAAAAACAACCCAGGGTTGCTAGACCAATGAAACAAGCACGCGTTTAATAAAGGCTGCATTGCAATACGTGGGACGTTTGTTGTTTGAATATCACATTATGCATATTAcagttttgtaaaattactCATACGgtgatttttattcatatcgCCCCATGTGCTCGTTTCACTCACGctgttttgcattattgttgGCTTCAAATAAGGtgctattttttgtttctgGTTCTTTCCTCTCACAGTCCCTCCACTACGGATGACTTTCTGAAAGATCTGTTTGCCAGCTCTGGATACACAGTCAAGGCCTTCAAGTTTTTCCA
>TU17470
gtgcgtgtgtgcgtgcgtgtgtgcgtgcgtgtgtgcgtgcgtgtgtgcgtgcgtgcgtgtgtgtgtgcgtgcgtgtgtgtgcgtgtgaaatGTTGGATAAAACGCTCTTTAAGGCTTGAGTTTTTGTTGTTCACAGAAAGGTTTGTTCGGTGTAATACGATGTGTCTCGGGGTTAAAGCTTATCTGTAACACTTTATCTCTGGGTTTGTTTGTAGCGATGAGCCATTTGAACGGTCAGCGTCTGTATGGTAAGGTGATCCGTGTGACCATCTCGAAGCACCAGACGGTGCAGCTCCCCAGAGAGGGTCAGGAGGACCAGGGCCTGACCAAAGACTTCAGCGGGAGCCCGTTGCACCGCTTCAAAAAGCCCGGCTCCAAGAACTTCCAGAACATCTTCCCTCCCTCCGCCACCCTGCACCTCTCAAATATCCCTCCCTCCACTACGGATGACTTTCTGAAAGATCTGTTTGCCAGCTCTGGATACACAGTCAAGGCCTTCAAGTTTTTCCA
>TU17472
TNAATGCGGTACAGACAGGAAGCATGTCTTTGAGCACTGTTGATGGAGCAGGCATGGGCAGCCAAAGCCCTGTTCTGAGAGTCATTGTTGAAAATCTTTTCTACCCAGTTACTCTTGATGTTCTTCACCAGATCTTCTCAAAGTTTGGCACCGTTTTGAAGATTATAACCTTTACCAAAAACAACCAGTTCCAAGCACTGGTCCAGTACTCAGATGGAATGACTGCTCAGCATGCAAAACTGTCTTTAGATGGGCAGAACATCTACAATGCTTGCTGTACCCTTCGCATCAGTTTCTCTAAGCTCACCAGCTTGAATGTTAAGTATAACAACGATAAGAGCAGAGACTACACTCGCCCTGACTTGCCTACCGGAGACAGTCAACCCTCCCTCAATGCACAGACGATGGCTGCAGCTGCCTTGACTGCTCCTGGTATTATCTCTGCATCACCATATGCTGGGGCTCATGGTTTCCCACCAACATTTGCCATTCAGCAGGCAGCAGG
>TU17473
GTCTACCTCCCATCTACGACAACCTGTAGTTTTGTTAGTGCCATGGACGGccGTTTAGAGACTGATCTGTATCCTCTGGGATCCAGTTACGTCACTGAAATAGACAGTGTCCATGATATAACGGTCGGCACAAAGAGGGGATCTGACGAACTCTTTTCCTCCTGCATATCTAACGGACCTTATATAATGAGCTCTGGAGCagCAAATGGTAATGACAGCAAGAAGTTCAAAGGGGACATCAGGAGCCCAGGCATTCCTTCACGAGTCATTCATGTACGCAAACTGCCAAATGACATAAATGAAGCAGAAGTTATTTCTTTGGGGCTTCCCTTTGGCAAAGTGACCAACCTTCTGATGCTAAAAGGAAAGAACCAGGCCTTCCTGGAGATGAACACTGAGGAGTCAGCACAGACTATGGTCAGCTACTACTCCTCCGTCACCCCTGTCATCCGCAACCATCCCATCTACATGCAGTATTCCAATCACAAGGAGCTGAAGACTGACAACTCACCCAACCAAGTTGTGAGTACAAAT
>TU17474
gccGTTTAGAGACTGATCTGTATCCTCTGGGATCCAGTTACGTCACTGAAATAGACAGTGTCCATGATATAACGGTCGGCACAAAGAGGGGATCTGACGAACTCTTTTCCTCCTGCATATCTAACGGACCTTATATAATGAGCTCTGGAGCagCAAATGGTAATGACAGCAAGAAGTTCAAAGGGGACATCAGGAGCCCAGGCATTCCTTCACGAGTCATTCATGTACGCAAACTGCCAAATGACATAAATGAAGCAGAAGTTATTTCTTTGGGGCTTCCCTTTGGCAAAGTGACCAACCTTCTGATGCTAAAAGGAAAGAACCAGGCCTTCCTGGAGATGAACACTGAGGAGTCAGCACAGACTATGGTCAGCTACTACTCCTCCGTCACCCCTGTCATCCGCAACCATCCCATCTACATGCAGTATTCCAATCACAAGGAGCTGAAGACTGACAACTCACCCAACCAAGTTGTGAGTACAAAT
>XM_043224176.1
GCCGCCATTTTGTAAGGATATAAGAAATACTAGCAGGTCTACCTCCCATCTACGACAACCTGTAGTTTTGTTAGTGCCATGGACGGccGTTTAGAGACTGATCTGTATCCTCTGGGATCCAGTTACGTCACTGAAATAGACAGTGTCCATGATATAACGGTCGGCACAAAGAGGGGATCTGACGAACTCTTTTCCTCCTGCATATCTAACGGACCTTATATAATGAGCTCTGGAGCagCAAATGGTAATGACAGCAAGAAGTTCAAAGGGGACATCAGGAGCCCAGGCATTCCTTCACGAGTCATTCATGTACGCAAACTGCCAAATGACATAAATGAAGCAGAAGTTATTTCTTTGGGGCTTCCCTTTGGCAAAGTGACCAACCTTCTGATGCTAAAAGGAAAGAACCAGGCCTTCCTGGAGATGAACACTGAGGAGTCAGCACAGACTATGGTCAGCTACTACTCCTCCGTCACCCCTGTCATCCGCAACCATCCCATCTACATGCAGTATTCCAATCACAAGGAGCTGAAGACTGACAACTCACCCAACCAAGTTGGCAATTACTCAATATAAATGGATCTTTTGAGACTGATNAATGCGGTACAGACAGGAAGCATGTCTTTGAGCACTGTTGATGGAGCAGGCATGGGCAGCCAAAGCCCTGTTCTGAGAGTCATTGTTGAAAATCTTTTCTACCCAGTTACTCTTGATGTTCTTCACCAGATCTTCTCAAAGTTTGGCACCGTTTTGAAGATTATAACCTTTACCAAAAACAACCAGTTCCAAGCACTGGTCCAGTACTCAGATGGAATGACTGCTCAGCATGCAAAACTGTCTTTAGATGGGCAGAACATCTACAATGCTTGCTGTACCCTTCGCATCAGTTTCTCTAAGCTCACCAGCTTGAATGTTAAGTATAACAACGATAAGAGCAGAGACTACACTCGCCCTGACTTGCCTACCGGAGACAGTCAACCCTCCCTCAATGCACAGACGATGGCTGCAGCTGCCTTGACTGCTCCTGGTATTATCTCTGCATCACCATATGCTGGGGCTCATGGTTTCCCACCAACATTTGCCATTCAGCAGGCAGCAGGTCTGTCTCTGCAGGGTGTGCCTGCTGGGGCTCTTGCATCGCTCGGTGTCCCCGGTGCAGCGGCGGCGGCTGCGGCGGCAGCTGCAGCAGGACGCCTGAGTCTTTCTGGTCTCGCTGCTGGTGGGAACAGTGTCCTGCTGGTCAGCAACCTTAACCCAGAGAGCATATCACCACACGGGCTCTTCATCTTATTCGGAGTGTACGGAGATGTTCACCGAGTCAAGATCCTGTTCAACAAGAAAGAGAATGCCTTAATACAGATGGCAGACGCCACGCAAGCCCAGCTCGCGATGAGCCATTTGAACGGTCAGCGTCTGTATGGTAAGGTGATCCGTGTGACCATCTCGAAGCACCAGACGGTGCAGCTCCCCAGAGAGGGTCAGGAGGACCAGGGCCTGACCAAAGACTTCAGCGGGAGCCCGTTGCACCGCTTCAAAAAGCCCGGCTCCAAGAACTTCCAGAACATCTTCCCTCCCTCCGCCACCCTGCACCTCTCAAATATCCCTCCCTCCACTACGGATGACTTTCTGAAAGATCTGTTTGCCAGCTCTGGATACACAGTCAAGGCCTTCAAGTTTTTCCAGTGAGTTCTcatcacatttgtttttgttctcagCCTTCATTTATCTGATTTTAGTGACTGTTTGCTCACATGGGGAAGA

Function

symbol description
ptbp1a Predicted to enable mRNA binding activity. Acts upstream of or within several processes, including intestinal epithelial structure maintenance; negative regulation of Notch signaling pathway; and positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration. Predicted to be active in nucleus. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1).
ptbp3 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human PTBP3 (polypyrimidine tract binding protein 3).

NR:

description
PREDICTED: polypyrimidine tract-binding protein 1-like

GO:

id name namespace
GO:0045746 negative regulation of Notch signaling pathway biological_process
GO:0006397 mRNA processing biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0060472 positive regulation of cortical granule exocytosis by positive regulation of cytosolic calcium ion concentration biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17467 False 1103 TUCP 0.48 5 13553852 13558004
TU17469 False 1747 TUCP 0.48 3 13553852 13558004
TU17470 False 510 TUCP 0.44 2 13553852 13554619
TU17472 False 505 TUCP 0.38 4 13559222 13560265
TU17473 False 534 TUCP 0.55 6 13560329 13564329
TU17474 False 485 TUCP 0.35 5 13560329 13563302
XM_043224176.1 True 1761 mRNA 0.49 15 13553773 13564365

Neighbor

gene id symbol gene type direction distance location
LOC122327000 cdh7,LOC107584702,LOC107729377,LOC107602530,LOC107674380,LOC108432272 coding downstream 1224 13535103 ~ 13552549 (-)
cdh6 cdh6,LOC107667294,LOC107728946,LOC107678945,LOC107584507,LOC107567409 coding downstream 577358 12948439 ~ 12976415 (-)
c2h5orf22 zgc:56556,LOC107667290,LOC107729038,LOC107586438,LOC107714825 coding downstream 633201 12912688 ~ 12920572 (-)
gad3 zgc:163121,LOC107584517,LOC107674337,LOC107714838,LOC107567402,LOC108432257 coding downstream 664399 12878261 ~ 12889374 (-)
LOC122360584 rnf31,LOC107728933,LOC107714842,LOC100334178 coding downstream 690060 12850434 ~ 12863713 (-)
LOC122327014 LOC107688502,LOC107729325,LOC107584893,LOC107674018,LOC107732516 coding upstream 1817 13566182 ~ 13716279 (-)
c2h10orf67 LOC107751365,LOC107585965,LOC107686066,LOC107550695 coding upstream 347491 13911856 ~ 13928370 (-)
paxip1 paxip1,LOC107686023,LOC107550719,LOC107664085,LOC107584425 coding upstream 430423 13994788 ~ 14007897 (-)
cnpy1 LOC107550718,LOC107686078,LOC107586387,LOC107751369 coding upstream 478563 14042928 ~ 14051633 (-)
shhb shhb,LOC107586383,LOC107751367,LOC107686079,LOC107664041,LOC107732558,LOC107550703 coding upstream 513627 14077992 ~ 14083464 (-)
G11770 NA non-coding downstream 81376 13471698 ~ 13472397 (-)
G11722 NA non-coding downstream 463623 13074021 ~ 13090150 (-)
LOC122362470 NA non-coding downstream 853464 12696916 ~ 12700309 (-)
G11676 NA non-coding downstream 858094 12695480 ~ 12695679 (-)
G11669 sepp1b,LOC107729074,LOC107674235,LOC107679336 non-coding downstream 891901 12658294 ~ 12661872 (-)
G11792 NA non-coding upstream 129954 13694319 ~ 13701311 (-)
G11794 LOC101886882 non-coding upstream 184575 13748940 ~ 13792877 (-)
LOC122357571 NA non-coding upstream 451980 14016345 ~ 14030265 (-)
G11958 NA non-coding upstream 537153 14101518 ~ 14104983 (-)
G11940 LOC107751355,LOC107686027,LOC107584387,LOC107550714,LOC107732566,LOC107664055 non-coding upstream 575117 14139482 ~ 14141857 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 83510 13315229 ~ 13470263 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other downstream 715680 12789524 ~ 12838093 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 1938835 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 1976257 11576391 ~ 11577516 (-)
crsp7 crsp7,LOC107722610,LOC107688472,LOC107550620,LOC107709903,LOC107585090,LOC107680253 other downstream 2100570 11447089 ~ 11453203 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 1014630 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 1556222 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 1569606 15133971 ~ 15153989 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 1995298 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 2660358 16224723 ~ 16268835 (-)

Expression


Co-expression Network