G11820


Basic Information

Item Value
gene id G11820
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14002545 ~ 14068095 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17513
CCTGGCTCGTGTCCGAACAGTTGGTGTAGCTGTGTAGGCATCACTGGAGGTTGCAGCATGGTCTGGGTCTGATGTTGAGCAACCTGCTGATTCTGATGTTGTAGAGACTGCTGGTTCTGATGTTGTAGAGACTGCTGGTTCTGCAGATGCTGCTGTTGCATTTGCTGTTGTTGATGCAGCTGTTGCATGTGCTGCTGTTGGAGTTGCTGTTGTAAGAaatgttgctgctgctgcaaatgCTGTTGGTGCATCTGCTGTTGGTTttgctgttgctgctgttgttgttgttgttgttgttgctgctgctgctgttgctgctgctgctgctgcaactGTAACTGGAGCCTATGCTGCTGTTGTAACTGCTGCAAATGTTGCTGTTGCAAGGGTGGCCTTGGAAGCTGCTGTGGTCGCATTTGTTGCTGTGGGAATGTATGTTGTAGttgttgctgctgttgctgttgttgtgcATACATCTGTTGATGCATCTGCTGTTGCAAGAACTGATGAGACTGCTGAGGCATTTGAGGGAAGCCTTGCTGCTGTggcggctgctgctgctgctgttgttgttgttgttgttgttGTTGTGGTGGTGGCGG

Function

GO:

id name namespace
GO:0005787 signal peptidase complex cellular_component
GO:0017053 transcription repressor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17513 True 602 lncRNA 0.50 2 14002545 14068095

Neighbor

gene id symbol gene type direction distance location
si:ch211-207d6.2 LOC107686022,LOC107584435,LOC107732580,LOC107751360 coding upstream 10221 13939270 ~ 13992324 (+)
ptf1a ptf1a,LOC107732570,LOC107664050,LOC107586418,LOC107686074,LOC107550704,LOC107751373 coding upstream 98295 13902910 ~ 13904250 (+)
dlgap1a dlgap1a,LOC107751362,LOC107584464,LOC107550721 coding upstream 109860 13835218 ~ 13892685 (+)
LOC122326989 NA coding upstream 579382 13411296 ~ 13423163 (+)
cdh18a cdh18,LOC107706951,LOC107686063,LOC107664087,LOC107716360 coding upstream 704400 13259743 ~ 13298145 (+)
dnajb6a LOC107732567,LOC107584409,LOC107686029,LOC107751357 coding downstream 31255 14099350 ~ 14105505 (+)
kcnb2a kcnb2,LOC107584379,LOC107751354,LOC107686026,LOC107664054,LOC107550713,LOC108435719 coding downstream 49391 14117486 ~ 14136011 (+)
rdh10b rdh10b,LOC107584387,LOC107751355,LOC107686027,LOC107732566 coding downstream 71382 14139477 ~ 14141857 (+)
tmem70 NA coding downstream 83971 14152066 ~ 14153672 (+)
pi15b pi15b,pi15,LOC107746926,LOC107686080,LOC107732565,LOC107550701,LOC107664030,LOC108435710,LOC107586375 coding downstream 122374 14190469 ~ 14194710 (+)
G11823 NA non-coding upstream 7172 13994791 ~ 13995373 (+)
G11812 NA non-coding upstream 85354 13904568 ~ 13917191 (+)
G11779 NA non-coding upstream 301219 13694319 ~ 13701326 (+)
G11740 NA non-coding upstream 535584 13315229 ~ 13466961 (+)
LOC122362453 NA non-coding upstream 591936 13368593 ~ 13410609 (+)
LOC122357607 NA non-coding downstream 23469 14091564 ~ 14098847 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding downstream 40060 14108155 ~ 14166955 (+)
G11855 NA non-coding downstream 63664 14131759 ~ 14164377 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding downstream 68019 14136114 ~ 14185786 (+)
G11894 NA non-coding downstream 301593 14369688 ~ 14371834 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1128537 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1376158 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2064955 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2494841 11482104 ~ 11507704 (+)
rps28 NA other upstream 2557974 11422090 ~ 11444571 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 107269 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 678012 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 708227 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 1173702 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1792084 15860179 ~ 15875764 (+)

Expression


Co-expression Network