G11832 (rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715)


Basic Information

Item Value
gene id G11832
gene name rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14136114 ~ 14185786 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17537
ACACAGATGTAGCATCTTTGCAAAGACTTCAGGAGACACTCGCTTCACAGTATATCACATTAGCAGACTAAAATGTCATAATAAAGAGATGCCaagaaatacactttaaaaccagtgtttgtgtaaatgattttattttttcagaccAACAgcaaaaatgttccaaaaaacCTGTAAGagaccaaaacattttagattCAAAGTCTGACTTGAGAAGGGCAATTAGTACAAAGTACAAAGATTTTTCTGCcttcacatttaaatgaattattatttaattcccAACAGGCCTTAAGAGGAtatttaaaccacaaaaaaatctGCACAATTTGAGAGCTCTCACACTATGTGGTTAATCAGTAAAATGATAAACATGACTATCATTCAAGTAATGGCTAAATATCATTTTCTAAATGAATATTACAGTGAACTGCTTCCATTAATATCAGACTTCTGAGCTCAGCTGCTCACCTAATGGTCTTAGTTCATCCTCCTGACGAGCCTGTTGATCTGGTCCTCCCTGTTTCCTGCATCACCTCCCTCAACAAAGTGGGTGGTTTTCTTGTTCATGCCACCACGAGGGGAGGACAGTTTGAATGGCCAAAGGAAGTTGTTTGCATACTTGAAGTTCTTTCCAACAGTGTAGATCTCGTGGATGAGATCCTCAACACAGATGATTCCGCAACGACCTGGAGAGATACAAATCATGTGACTGCACATTAGGCATTACACGAGTGTGTTTTAATCAGGGTGTGCAATGGTTCATCCTTACCAAGGGACCTCTCGATCAGGGAGTTGTCTGTCAGCGGGATGCGCTGCTTCCTGATCTTGCCATACCCACGCTTGTACACAAGCTCACGCACAGATTTAAGGTTGGGGtaactgaaaacaaaatcaatatggAATTTTAACAAGCATAGAGAAGGACATGTAAGGTACAATGTCACAGAcctatagttcacccaaaaatgaagtcTTCCTCCCAAGTTACTCAAGTGACAACGCACCAAATCTGGCACACTATTAGAAGTCTTCTGAAGCAATGCAACAGATCAGCGCAAGAAAAGCTAAAAGCCAGAGTTCTTACAGCCATTGTATTATAAGAAAAGTTAGTAACACTTGTTatctacgacttttccctccaatttttaatttgctgcttattatttgttaaatttaggtcTGGGGAATAGTAGAAACTTAGAATAAGATCATGTAGAATAAGAATGTGTGCTTAAATTAGCAGTAAATGGATAAAATTCTAATACCAAgcataagcaactaataggtttaactaaaaaaaaaaaactattgaaaagTTCTTAAACTTCCTTTCCatacaaatggaaaaaaagtgattaaactAGTTTGAAGTAATGAGGATGAACAAGCAGCTTTCATTTCTGAGCAATGTgtatattaccatttaaaaaagtaGCTAATTTCACGCCTTTGGCATTCAAGGCATTGGTttacttcaaaacaataaagatGCACAAAATTCATAATATTGCTATATAAagtgcatgttattttaaaatgcactattCCAGTGATGGCTCAAATCATCATGCTGATCTGAAACTCAAACATTCAAATGTTGCAAACAGTTATCCCCCGGATaacttaatttcttaaatatctttcaaaacagttttgtgCCTTTCACCACAAGACAGCTGCAAATACACCATGGACATTAACAATTTATACATTATCAACCCAAAACACATCTACATACCCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGAGGCCTTGTTCAGTTTCACAAAGACACCGTTGAAGATCTGGCGGAGACGGAGCAACTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGATACCTGATCCGAATGACAAACGCCAACTTGGGCTCAGCTGGGACGTAGTAGTTGCCTGCCTTGCGAGCCATCCTGCTCATGCGGATTTCACGCCGGTACATCTGCTTGTATTCTTTGTGATAAGCTTCAGCTCTCTTGAAGATGAGCTTTCTGGTGACTTTGCCTGCCTTTTAAAGTCA
>TU17538
ACACAGATGTAGCATCTTTGCAAAGACTTCAGGAGACACTCGCTTCACAGTATATCACATTAGCAGACTAAAATGTCATAATAAAGAGATGCCaagaaatacactttaaaaccagtgtttgtgtaaatgattttattttttcagaccAACAgcaaaaatgttccaaaaaacCTGTAAGagaccaaaacattttagattCAAAGTCTGACTTGAGAAGGGCAATTAGTACAAAGTACAAAGATTTTTCTGCcttcacatttaaatgaattattatttaattcccAACAGGCCTTAAGAGGAtatttaaaccacaaaaaaatctGCACAATTTGAGAGCTCTCACACTATGTGGTTAATCAGTAAAATGATAAACATGACTATCATTCAAGTAATGGCTAAATATCATTTTCTAAATGAATATTACAGTGAACTGCTTCCATTAATATCAGACTTCTGAGCTCAGCTGCTCACCTAATGGTCTTAGTTCATCCTCCTGACGAGCCTGTTGATCTGGTCCTCCCTGTTTCCTGCATCACCTCCCTCAACAAAGTGGGTGGTTTTCTTGTTCATGCCACCACGAGGGGAGGACAGTTTGAATGGCCAAAGGAAGTTGTTTGCATACTTGAAGTTCTTTCCAACAGTGTAGATCTCGTGGATGAGATCCTCAACACAGATGATTCCGCAACGACCTGGAGAGATACAAATCATGTGACTGCACATTAGGCATTACACGAGTGTGTTTTAATCAGGGTGTGCAATGGTTCATCCTTACCAAGGGACCTCTCGATCAGGGAGTTGTCTGTCAGCGGGATGCGCTGCTTCCTGATCTTGCCATACCCACGCTTGTACACAAGCTCACGCACAGATTTAAGGTTGGGGtaactgaaaacaaaatcaatatggAATTTTAACAAGCATAGAGAAGGACATGTAAGGTACAATGTCACAGAcctatagttcacccaaaaatgaagtcTTCCTCCCAAGTTACTCAAGTGACAACGCACCAAATCTGGCACACTATTAGAAGTCTTCTGAAGCAATGCAACAGATCAGCGCAAGAAAAGCTAAAAGCCAGAGTTCTTACAGCCATTGTATTATAAGAAAAGTTAGTAACACTTGTTatctacgacttttccctccaatttttaatttgctgcttattatttgttaaatttaggtcTGGGGAATAGTAGAAACTTAGAATAAGATCATGTAGAATAAGAATGTGTGCTTAAATTAGCAGTAAATGGATAAAATTCTAATACCAAgcataagcaactaataggtttaactaaaaaaaaaaaactattgaaaagTTCTTAAACTTCCTTTCCatacaaatggaaaaaaagtgattaaactAGTTTGAAGTAATGAGGATGAACAAGCAGCTTTCATTTCTGAGCAATGTgtatattaccatttaaaaaagtaGCTAATTTCACGCCTTTGGCATTCAAGGCATTGGTttacttcaaaacaataaagatGCACAAAATTCATAATATTGCTATATAAagtgcatgttattttaaaatgcactattCCAGTGATGGCTCAAATCATCATGCTGATCTGAAACTCAAACATTCAAATGTTGCAAACAGTTATCCCCCGGATaacttaatttcttaaatatctttcaaaacagttttgtgCCTTTCACCACAAGACAGCTGCAAATACACCATGGACATTAACAATTTATACATTATCAACCCAAAACACATCTACATACCCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGAGGCCTTGTTCAGTTTCACAAAGACACCGTTGAAGATCTGGCGGAGACGGAGCAACTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGATACCTGATCCGAATGACAAACGCCAACTTGGGCTCAGCTGGGACGTAGTAGTTGCCTGCCTTGCGAGCCATCCTGCTCATGCGGATTTCACGCCGGTACATCTGCTTGTATTCTTTGTGATAAGCTTCAGCTCTCTTGAAGATGAGCTTTCTGGTGACTTTGCCTGCCTTCTTGCTTCAGAGCAAGATTATTAAGAAAGCTGCCAGTGTTACACAGCCTTACAAAACCTGACAGTTCATTCACTGACGGCTCAGTGAATAAAAGCCAACCAAAGTGACGCCTCTCCGTGGATTAGATAACTCTATTTTCAGCCTAAATACCAGCAAACAATAAAGAGCCCCTTGTACAAACTCAAAAAGTATGCAGCATA

Function

symbol description
rpl7 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7).

NR:

description
PREDICTED: 60S ribosomal protein L7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17537 False 2056 lncRNA 0.39 3 14136114 14185786
TU17538 True 2247 lncRNA 0.48 3 14136114 14144277

Neighbor

gene id symbol gene type direction distance location
kcnb2a kcnb2,LOC107584379,LOC107751354,LOC107686026,LOC107664054,LOC107550713,LOC108435719 coding upstream 103 14117486 ~ 14136011 (+)
dnajb6a LOC107732567,LOC107584409,LOC107686029,LOC107751357 coding upstream 30609 14099350 ~ 14105505 (+)
rbm33b LOC107686025,LOC107751368,LOC107585941 coding upstream 60671 14051753 ~ 14075443 (+)
en2b eng2b,LOC107664096,LOC107751371,LOC107686076,LOC107586406,LOC107550717,LOC107732562 coding upstream 96940 14035516 ~ 14039174 (+)
htr5aa htr5aa,LOC107550720,LOC107732551,LOC107664052,LOC107686075,LOC107586412,LOC107751372,LOC103047601 coding upstream 120219 14009083 ~ 14015895 (+)
pi15b pi15b,pi15,LOC107746926,LOC107686080,LOC107732565,LOC107550701,LOC107664030,LOC108435710,LOC107586375 coding downstream 4683 14190469 ~ 14194710 (+)
crispld1b crispld1b,LOC107732556,LOC107746925,LOC107664039,LOC107686081,LOC107550700 coding downstream 9773 14195559 ~ 14203218 (+)
socs6b LOC107746913,LOC107584321,LOC107686035,LOC107664088,LOC107732589,LOC107550707 coding downstream 28708 14214494 ~ 14218551 (+)
LOC122355826 LOC107746923,LOC107732576,LOC107550699,LOC107686037,LOC107664020 coding downstream 48033 14233819 ~ 14241872 (+)
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding downstream 56887 14242673 ~ 14244944 (+)
LOC122357607 NA non-coding upstream 37267 14091564 ~ 14098847 (+)
G11820 NA non-coding upstream 68019 14002545 ~ 14068095 (+)
G11836 NA non-coding upstream 84494 14048717 ~ 14051620 (+)
G11823 NA non-coding upstream 140741 13994791 ~ 13995373 (+)
G11812 NA non-coding upstream 218923 13904568 ~ 13917191 (+)
G11894 NA non-coding downstream 183902 14369688 ~ 14371834 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding downstream 186132 14371918 ~ 14375750 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 203199 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 309664 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 374074 14559860 ~ 14603545 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1262106 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1509727 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2198524 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2628410 11482104 ~ 11507704 (+)
rps28 NA other upstream 2691543 11422090 ~ 11444571 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 560321 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 590536 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 1056011 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1674393 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 2081257 16267043 ~ 16268797 (+)

Expression


Co-expression Network