G11856 (jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083)


Basic Information

Item Value
gene id G11856
gene name jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14108155 ~ 14166955 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17582
aaaaaaaaaaaaaaaaatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagattttttctcCATAGGACATGTTAAAACTTACAGTCCAAACTGTAACGTGCTGTTATTTTCAGGTTTGATTTTACATTAGATATTTTCGTCATCCTTAGCTACAGGTGCAGAAATATAAAACGCAACggaaaggaaaacaaacaaaaaaaagtcaagacaAAGTCGTTAAACCAGTACCATGCACAGGCATGTCACGGATGAATCTCCCGAAACAGGAGTAAGAGATGTTAGACAAGGCTGTAGAGATGGGTAATGGAATAAGACTGGCAAGTGACCCTTTCAAAATGTGCATGGTGTTTCGAACCAAGCGGAAAGCGGACACTGGTACACACTCCTGCTGCCCAAACACACTGGCAACCCACTGCACATCTCCCCTTTAAAACGTCAGTTGGTAAAATAGTAAGGCAGCTGTTCGCTTCCGTCAACTAAAAGTGCATCTCCGAACATATCCAGTTAAGTCCCCCCCATTCCACCCCTCCCCTTAGCAGCGGGGTGGACATGCACTTGACTGGGTACGGCTTGGATCAGCagattctttttctttcccaacGACTGCTTGCTTCAGCTTTCAGAGCCCAAGCGAGTCACAAATCATCGCCAGATGAACTGGGTTGGCTCAGGCCGAATGGTCCGGGTTTCGTCTTTCTCCCATGATTTGCTCTAATTCCAGTCGTCCAGTCCTTTGCCTGTGTCTGAGTCTGACTGGCgccattttgttttaaaggcCATTGACGCAAGTGCGGAGAATTAGGGGCCTATGCCGCTAGTTTTCATGAGCTCACTGAAGGGTCGAAACAGTTAGAGGGTAAGTAATTATGTTGAATAACATTCAGGCACAGCTGCAATTACATGGCAAGAGTAAGGTAGACTACATTAGTTGGTGACTGACATGGGGCAAAGATCAGGGCCTATGGCAACCTGCAAAATCCTCCATCTGAGTAAGAGAGTCTTACCTGAGTTTAATGTGCCGTCAAGTGAggaaatggacaaaaataattGCCAGTCCAATATTTATCAGCATCACTAGTATGACCAATATTGAGTTGGGACCCTGAAGAACTGACTCCTCCTCAACAATGTCAGAAGTAATTTCCATGCTGGCTTTCTTAGTTTCTGCTAGGCTCTTTGGCTTCAATGATTCCTGTTTCTTCAGTTTGGGTTCGGGTTTGCTCTCTTTGGCCATTACTGGTTTGGGGGTCGGTGCGCGGTACTGCTTTGCAGGCGGGGGGGGCATCCTGCTATGAGCAGTTGACGCTGCATGGAGTTCTTCGATCTCCGGATCATCAGGTGGCATCATCACCTCCGCCTTCACATAGTATCCGTGATACTGGGAGTGCAGCTCACCGTTCCCAGGGCTGGAGGCATTGGCGACCGGCGCCGGCGGCTTGGAGGGTTTGGCTACGGGTACTACCTCCTGTTTTACTTCCTGTTTGTCTGATATCCTGGAAGTAACCTTGGTGACACCCGCTGCCAGGCTCTCGGCAGCAGGGGGCTTGTTCTCTTTGATGGCTTTTGGGGCACTTCTGTTAAAGAAGGGCTTTTTCTTGCTGAGAGGGGGGGAGGGAGGCGGTGTGGGCCCGGGACTTTGGGAAGGGGACTGGGTTGGGGTCGTGCCTTTGCGATAAAAGTGCGGACTTCCTGAAGGcgatttctctttcttttcttctggtACTTCTTTAATCTCGATGGGTTCACTGGAAAACCTTTGCTTGATATAGTCAGGACCTTAAAAGAGCATAAAACTCAGaattagtttactttttttattgattcatttatatttttgcattttatataaatatagaattttacatttagacaGTCTTAGTAAAAGGTT

Function

symbol description
jph1b Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of junctional membrane complex. Predicted to be active in endoplasmic reticulum membrane; plasma membrane; and sarcoplasmic reticulum. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2K. Orthologous to human JPH1 (junctophilin 1).

NR:

description
PREDICTED: junctophilin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17582 True 1900 lncRNA 0.45 3 14108155 14166955

Neighbor

gene id symbol gene type direction distance location
dnajb6a LOC107732567,LOC107584409,LOC107686029,LOC107751357 coding upstream 2650 14099350 ~ 14105505 (+)
rbm33b LOC107686025,LOC107751368,LOC107585941 coding upstream 32712 14051753 ~ 14075443 (+)
en2b eng2b,LOC107664096,LOC107751371,LOC107686076,LOC107586406,LOC107550717,LOC107732562 coding upstream 68981 14035516 ~ 14039174 (+)
htr5aa htr5aa,LOC107550720,LOC107732551,LOC107664052,LOC107686075,LOC107586412,LOC107751372,LOC103047601 coding upstream 92260 14009083 ~ 14015895 (+)
si:ch211-207d6.2 LOC107686022,LOC107584435,LOC107732580,LOC107751360 coding upstream 115831 13939270 ~ 13992324 (+)
pi15b pi15b,pi15,LOC107746926,LOC107686080,LOC107732565,LOC107550701,LOC107664030,LOC108435710,LOC107586375 coding downstream 23514 14190469 ~ 14194710 (+)
crispld1b crispld1b,LOC107732556,LOC107746925,LOC107664039,LOC107686081,LOC107550700 coding downstream 28604 14195559 ~ 14203218 (+)
socs6b LOC107746913,LOC107584321,LOC107686035,LOC107664088,LOC107732589,LOC107550707 coding downstream 47539 14214494 ~ 14218551 (+)
LOC122355826 LOC107746923,LOC107732576,LOC107550699,LOC107686037,LOC107664020 coding downstream 66864 14233819 ~ 14241872 (+)
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding downstream 75718 14242673 ~ 14244944 (+)
LOC122357607 NA non-coding upstream 9308 14091564 ~ 14098847 (+)
G11820 NA non-coding upstream 40060 14002545 ~ 14068095 (+)
G11836 NA non-coding upstream 56535 14048717 ~ 14051620 (+)
G11823 NA non-coding upstream 112782 13994791 ~ 13995373 (+)
G11812 NA non-coding upstream 190964 13904568 ~ 13917191 (+)
G11894 NA non-coding downstream 202733 14369688 ~ 14371834 (+)
G11895 rgs20,LOC107584260,LOC107746905 non-coding downstream 204963 14371918 ~ 14375750 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 222030 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 328495 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 392905 14559860 ~ 14603545 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1234147 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1481768 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2170565 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2600451 11482104 ~ 11507704 (+)
rps28 NA other upstream 2663584 11422090 ~ 11444571 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 8409 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 579152 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 609367 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 1074842 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1693224 15860179 ~ 15875764 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016469 jph1b coding NC_007113.7 CM002886.2 30290719 ~ 30324610 (-)