G11895 (rgs20,LOC107584260,LOC107746905)


Basic Information

Item Value
gene id G11895
gene name rgs20,LOC107584260,LOC107746905
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14371918 ~ 14375750 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17630
CTCTTTGGGTGAGAGGATAGAGATGTAGTCTTCATAGATAATCCGCGCCTTCTCCTCGATGACGCTCTTATTGGTTTCCTTACAGAATTCCTCGCAGGCCAACCAGAAGAGCATGTTTTCCTCACTGAACTCAGTGCGCAGAAACTGCCGgaaggcgcttcttccagcggGGCAGTGCATCAGTTTGTCGAATGATTGCCCCCACAAGCAGACCTCCTCCGCAGTTGGTTTCGGACTGCCAAAAAACAGAGAAGTCTTAGTCAATTTTGGCAACAAATGCCTCAGCAGCCATTTTCCTCCGTTCTTCATGTGTTTTTCAAGAGATAATTCTTAgagctaaaatgttttagtcgGAAAGCTGACAAACTGtaatgataaaacaatagaaacatAGAGTATGTTACGGTAATTTGTCAGTTGCATCCTAgacaattcatttaaataaacataaagaaTATTTAGAGGTAATTTGTCATAAAGTTGCATGCCACTAAAAAAGGTCATTCATTTACATaagaacaaataatattttggtgTAATCTGTTGCAtcctagaaaaaaaattgcaatttgtttaaataaaaataaagaattcgTAAGAAAGCTGCATTGTAGAGAACAATaataattactgtaaatataaatttctATAAATTATATGTGTCATTTCTTTGCATCTTGCCACAATTatctgtttgacagcactaaaaactacagtaattattttacaacTTAGCAAACAATTTAGATTATGAAGCTAGAAATTCTTTTTCAATATCAATATTTACATACTACACCTAATCATCATAACACAGTAGCTAGCCAATATGTCGGTTTAAATGacacataaattattttttattaatactttactAAACAGCTTCCTAAAACGCTGGAATGGCTGACCTTTCCTCGAAGTCTGCATTCCCCTCTGCTTTAAAATCATACGAGGCTCTCCGGTTCCTCTCATCTCTGTCTTCATTCCTAACAGTGAGACTGCAAGGTAGTAAACACATCATGATCCCAAGGCACCTAACAGTAGGCATTAGGAAGCCTTGGAGTATCTTTCACCTGCTCAGTGTTCAGTTTATAACCGTAACAGCTGCTCATTATAAGCTCAAAGCCAGAACATCAAGAGTTCTGGTGTTTTATCAAAGCAGATGTCTTGGGACCTCAGACAATTCAGCAAAATATACATCATACTTAAATCACATCTAAGCGATATTCCAGGTGTACTCACTGTAGTGAAGATAAGTAATATAGTCTCgtcaaatgcaattattttcttataatacagTGATTTCCTGGACATTAGTTTGGCCCGAAATGAACCATGTTAGATAAGATCTCCCATTAGCAGCGTAACGAAAGAAAAACTCCTACCAGGagcagctgcagcagcagcacCAACAGAAGCAGCAGGCGTTGGAGCCACGGTTCCCCTGACCGGGCTGCTCGTTCTGGGTCGGTGCTGTGGTGCCCGCCACCGACTCCTGCTGCACCGACATCTGCCTCTTTCGCATCTCCATCCGCTCTGATCCCATGGGCTGCAGGAAACAGGATGCAACTGAGACGGGGCCAATACGACTGCAGCCACAGAGATCAACGGGACGAATTAATGGCTCGACAAACAAATGCAGGGGTTTAGATATCAGAGGAAGTTATTTTCCTCCAGTCCACTTAAACATTTTGCGGTTTCCAATGGAGAAAACAATGCTTTTAACGAAACAACAAACGTGCACGAAAGTGGCTTCCATTAACCGCCCGTgctagaaaataaaaagatgaagAAGGCATGTTTTGACTTGACCAGAAACCAAAATGCATGTCACAGATACTAACATGACCCAACATGTCGTACTTACTTCGAGCAGCTCTCCGCAGCATGCTTTGAATTAATTGCATACAGCCCGAACATAAACACAAAGTCATTTTTACGACTAACAACTGATAGATTACAGTTTCTATATCTGAATCATAAGCGTGTTGAGGAAATAGCTTGTTATCATAAGATAATTATCACATTCAGTGTTACAGTGCTTCTCATTCTGCAAACACGCTTAGGCCTACAGCACAATAAATTTAGACTTGTTGCCATGTGGGTGGGTTTTCTCGATTTCTTCTGATTTAAACAACCTGGTTTAGGGTTCAAACAAACCACGCATTGGATAAAAACCCAAGGTTATTTGAAGCATAAATGTAAGTTCCTGTACTGAACGGTCTTTATAAACGGATgcggattattattattattaaggctAAATGACATCTGATCAGCAGTTCTGATCTTGTCACGTTATTTCCATAGAATCGTGGAATAGAATTCCTCGCTTGAGCTGGAAGATGTTGGAATATTTGGGGGTAGGAGGGGGCGCAGCACGCATCTAGCTGCAGTCGGATCCCTTCATCAGTGATCACAGCCGCGGTGCATAAGAAACGCTCGAGCCGTGATTGATGGCAATAAACacgatttaaaaaataatcattagatTTTTCTATTTGCATGATTTCACGACTAACAAACGATGACGGTTACGGTGGTTCACAGAAAAGCCTGATAGGGTCTGCTAGATTTTTACCGAAGCAGAACAGgcgaaaaaaaagaatattatagCTTTAAATGTGAACCGCATCCTTAAAGATGGGGCACactgggggggaaaaaaatcaaaagacaAAGCGCATTCTACTCAAAATGGACTAACAGCATTTCCATCGCATATCCTCGCATTGCAAAGTGCCACCATGAAGCCCAGCTACAATATCTCTTTATCGCCCAGGACAACCATCGAAAAGACATTTCTGTCAAACATGACATGCATCTTCAACAATCAAAATCAAAGGTCGTTTTCTCCACTGATACcctgcatatttaaaaacaacgcAGGATCCCCATACTTACAATTTCACCATGTATGCCCAGAGATAAGAGATATTCTTTGCCTTGATTACATCCGTTGGCATAAGGATTTTTTAAAGACCGGCTGTTTTTTGACAATGCGCATGCGTGTCTCTCGCGAGCTGTGGCGGAGGTAGCGTAAATCCTCTGGATGTCACTGATTCATGATGCACTTACATCTAACGGTGAAATAcgacatatttaaatgttttccttGACTCCTGCGGTTCTTACTTTCGAATTATTTACATCCAGCTCCGCGCATCTGCCGAGCAAGCAAGTCACAAAcgccagtttaaaaaaaaataaacgctTACTGTTTTCGTGTTTAATGGAGGAGGGTGGCTAGGTTTAACACTGCCACCAATGAAATGAGTGGTCACGCAGACCGACTGTTTCCCTGTGCGCCTCACATGAGGTGTCAACAATGTGTCATAGAATGTGACTGGCAGGGTTATGGTGGACTTAAAATGTGAGGAAGACCCCCGCCATAAGCGCAGTAACATCACAAGGAGGTTCCCTTTCTCGTCGGGAACCAGGGCTCTCTTAGACTCGCTGGTGACATGACAGATTCTGTTGCACTCTTGCattaaatttatgcattttacaaGAACGCAACAAGCG

Function

symbol description
rgs20 Orthologous to human RGS20 (regulator of G protein signaling 20).

NR:

description
PREDICTED: regulator of G-protein signaling 20-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17630 True 3522 lncRNA 0.41 2 14371918 14375750

Neighbor

gene id symbol gene type direction distance location
tcea1 tcea1,LOC107746907,LOC107664035,LOC107558928,LOC107732572,LOC107686041,LOC107584254 coding upstream 3828 14363921 ~ 14368090 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC107686084,LOC107586344,LOC107732574,LOC107746919,LOC108440665,LOC108268141 coding upstream 20346 14348581 ~ 14351572 (+)
ankrd33bb ankrd33bb,LOC107550706,LOC107732577,LOC107686083,LOC107664029 coding upstream 98298 14262564 ~ 14273620 (+)
march6 march6,LOC107746911,LOC107686038,LOC107732575,LOC107664076 coding upstream 109504 14245255 ~ 14262414 (+)
atpsckmt fam173b,LOC107664046,LOC107746922,LOC107550697,LOC107686036,LOC107732578 coding upstream 126974 14242673 ~ 14244944 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 4321 14380071 ~ 14410644 (+)
oprk1 oprk1,LOC107586336,LOC107746918,LOC107664042,LOC107732559,LOC107558938 coding downstream 46486 14422236 ~ 14426212 (+)
chmp5a chmp5,LOC107732555,LOC107664100,LOC107558945,LOC107586329,LOC107686086,LOC107746917,LOC108440659 coding downstream 53181 14428931 ~ 14432593 (+)
bag1 bag1,LOC107746903,LOC107556611,LOC107732557,LOC107664079 coding downstream 57378 14433128 ~ 14436377 (+)
myom1a myom1a,LOC107686045,LOC107732591,LOC107664077,LOC107746915 coding downstream 64002 14439752 ~ 14461713 (+)
G11894 NA non-coding upstream 84 14369688 ~ 14371834 (+)
G11832 rpl7,LOC107664057,LOC107584398,LOC107686030,LOC107550715 non-coding upstream 186132 14136114 ~ 14185786 (+)
G11856 jph1b,LOC107686034,LOC107746914,LOC107550709,LOC107584332,LOC107732545,LOC107664083 non-coding upstream 204963 14108155 ~ 14166955 (+)
G11855 NA non-coding upstream 207541 14131759 ~ 14164377 (+)
LOC122357607 NA non-coding upstream 273071 14091564 ~ 14098847 (+)
G11898 LOC106524523,LOC107383785 non-coding downstream 13235 14388985 ~ 14437409 (+)
LOC122355240 NA non-coding downstream 119700 14495450 ~ 14497873 (+)
G11914 NA non-coding downstream 184110 14559860 ~ 14603545 (+)
G11917 NA non-coding downstream 260694 14636444 ~ 14636769 (+)
G11918 LOC107664027,LOC107713977,LOC107584165,LOC107556660 non-coding downstream 261839 14637589 ~ 14637805 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other upstream 192303 14175364 ~ 14179615 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other upstream 1497910 12867929 ~ 12874008 (+)
LOC122358236 NA other upstream 1745531 12623823 ~ 12626387 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other upstream 2434328 11908073 ~ 11937590 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 2864214 11482104 ~ 11507704 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 370357 14746107 ~ 14753161 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other downstream 400572 14776322 ~ 14782977 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other downstream 866047 15241797 ~ 15249249 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other downstream 1484429 15860179 ~ 15875764 (+)
G12531 LOC107722077,LOC107568983 other downstream 1891293 16267043 ~ 16268797 (+)

Expression


Co-expression Network