G12027


Basic Information

Item Value
gene id G12027
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14439743 ~ 14440787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU17811
CCCATAGCTGCTGCTCCTTTTCACATAAGCAGCATAAGACTGGCGGCTAACAGATGACAGGGAGCCTTGGTGATAGGTGCTCTCATAGCGCGTCTCAAGGTCCCGTTGCTGCTGTTCCTTCTGAAGTTTTAAGGATTCTGACATCCTGAGGTGATTTTTAAATCGGCCCCTTTCTCTTTCTGGTGCAGTCTCAAGTTCCCAATGAAAAGttgcttttccaaaaaaaagggACGAACTCCAAAAAATGAGAAGCCAGTGAAAATCCAGGCACAGCGGCGGGTATGGGGCAGCCGACAGGACGGGACTtcactgaacaaaaataatgctGCCACTCTGCAGATTGCAGCGTCCAGCCAGGACCTTGTA
>TU17812
CCCATAGCTGCTGCTCCTTTTCACATAAGCAGCATAAGACTGGCGGCTAACAGATGACAGGGAGCCTTGGTGATAGGTGCTCTCATAGCGCGTCTCAAGGTCCCGTTGCTGCTGTTCCTTCTGAAGTTTTAAGGATTCTGACATCCTGAGGTGATTTTTAAATCGGCCCCTTTCTCTTTCTGGTGCAGTCTCAAGTTCCAAGTCAAAGttgcttttccaaaaaaaagggACGAACTCCAAAAAATGAGAAGCCAGTGAAAATCCAGGCACAGCGGCGGGTATGGGGCAGCCGACAGGACGGGACTtcactgaacaaaaataatgctGCCACTCTGCAGATTGCAGCGTCCAGCCAGGACCTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17811 True 366 lncRNA 0.49 2 14439743 14440787
TU17812 False 365 lncRNA 0.49 2 14439743 14440787

Neighbor

gene id symbol gene type direction distance location
myl12.2 myl12.2,LOC107732590,LOC107746904,LOC103037289,LOC108436131 coding downstream 743 14436561 ~ 14439000 (-)
rgs20 rgs20,LOC107584260,LOC107686043,LOC107746905,LOC107664043,LOC107556579 coding downstream 60008 14370926 ~ 14379735 (-)
LOC122356353 LOC107746908,LOC107686040,LOC107584282,LOC107556566,LOC107664028,LOC107732544 coding downstream 79383 14353332 ~ 14360360 (-)
LOC122357171 LOC107556546,LOC107664084 coding downstream 91405 14345388 ~ 14348338 (-)
ctnnd2b ctnnd2b,LOC107746909,LOC107686039,LOC107550705,LOC107664081,LOC107732586 coding downstream 97110 14274964 ~ 14342633 (-)
emilin2a LOC107746901,LOC107686046,LOC107584212,LOC107751548,LOC107664089,LOC107558120 coding upstream 39394 14480181 ~ 14493766 (-)
clul1 LOC107664027,LOC107584165,LOC107556660,LOC107713977,LOC107686051 coding upstream 194957 14635744 ~ 14641164 (-)
mrc1b mrc1,LOC107713970,LOC107686053,LOC107664090,LOC107751555,LOC107556679 coding upstream 268745 14709532 ~ 14721348 (-)
myripa LOC107686056,LOC107584120,LOC107713972 coding upstream 312553 14753340 ~ 14772259 (-)
e2f5 e2f5,LOC107686091,LOC107713982,LOC107584115,LOC107558188,LOC107664024,LOC107751573 coding upstream 338514 14779301 ~ 14786610 (-)
G12024 NA non-coding downstream 9689 14428911 ~ 14430054 (-)
G11982 NA non-coding downstream 189203 14249003 ~ 14250540 (-)
G11969 NA non-coding downstream 245931 14193575 ~ 14193812 (-)
LOC122357595 NA non-coding downstream 248634 14190476 ~ 14191109 (-)
G11966 NA non-coding downstream 250145 14189196 ~ 14189598 (-)
G12034 NA non-coding upstream 15766 14456553 ~ 14459327 (-)
G12062 NA non-coding upstream 226946 14667733 ~ 14668539 (-)
G12082 NA non-coding upstream 250390 14691177 ~ 14699019 (-)
G12083 NA non-coding upstream 258966 14699753 ~ 14700378 (-)
G12084 cacnb2b,LOC107751551,LOC107664070,LOC107713974 non-coding upstream 260521 14701308 ~ 14703493 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 875378 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 969480 13315229 ~ 13470263 (-)
xkr4 xkr4,zgc:123035,LOC107728991,LOC107679338,LOC107714844,LOC107674319,LOC106569249 other downstream 1601650 12789524 ~ 12838093 (-)
hltf hltf,LOC107688483,LOC107722619 other downstream 2824805 11592441 ~ 11614938 (-)
G11317 pde4ca,pde4c,LOC107722623,LOC107680260 other downstream 2862227 11576391 ~ 11577516 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other upstream 138208 14578995 ~ 14610266 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other upstream 679800 15120587 ~ 15127491 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other upstream 693184 15133971 ~ 15153989 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other upstream 1118876 15559663 ~ 15579706 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 1783936 16224723 ~ 16268835 (-)

Expression


Co-expression Network