XLOC_006627 (kat6b)


Basic Information

Item Value
gene id XLOC_006627
gene name kat6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24881272 ~ 24906307 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012786
ATGGTGAAACTGGCCAATCCCCTGTACACAGAGTGGATTCTTGAGGCTATTCAGAAGATCAAAAGGCAGAAGCAGCGGCCTTCGGAGGAGCGGATTTGCCATGCTGTCTCATCTACACGTGGACTAGACAAGGGCGTCGTACTTCATCAGCTGGAGCTCGCTGTGAAGGATGGATCCATCCTTAAGGTTACCAGCAAAGGGTGCGCTTCGTACAAAGACCCGGATAACCCAGGAAGGATTACGCCTTTCAAGTTGGGAGGCTCTGGCACGGTCTCTGTTGGATCTGTGATACCTGCAGGAGATCTGCGTCATGTGGATTGGAATAAAATCCTTAGGAGGGCTATTGAAGGTCTGGGCGTCCCGTCTGGCTCCTCTCTAAGGAACATTGAGAGATTCCTTAGAAGCCAGGGCGACCTGGTGAATGTTGTGGCAAACCCCAGGTTTCAGCAGAGGCTGAGGCTAGCTGCTAAGCGGGCGGTTAACAACGGGCGCCTGCTCAAAGATGGGCCGCTCTACAGGTTGAACAGTGGTGGACTTGGAGGAAAGTCTTGCTTCAGGAACGTGGGGGTCTTTGGTGTCGACCTCCCACCTGTGACACTACTCCCCCATGAAAGAGACCAGCCACGTGCTGACCCCATACCCATATGCAGCTTCTGTTTGGGCACAAAGGAGTCGAATCGAGACAAGAGGCCAGAGGAGCTGCTGTCTTGTGCAGACTGTGGAAGCAGCGGCCATCCATCATGCCTGAAGTTCTCCGCTGATTTGACTGCAAATGTCAAGGCCCTGCGATGGCAGTGCATCGAATGCAAAACATGCAGTTCCTGTCAGATTCAGGGGAAGAATGCTGACGAGATGCTCTTCTGCGACTCCTGCGACAGGGGTTTCCATATGGAGTGCTGTGACCCACCGCTCTCCAGAATGCCAAAAGGAATGTGGATCTGCCAAGTATGCAGGCCAAAGGAGCAGGAGGGAAAACGGTTGCTACACAAGACAGCGGCCCAGATCAAAAGGCGATATGCAAAGCCAGGAAGGCCAAGAAAAAATCTAGCACATCCAACAATGTCTGACAGTGGTGGTCCAGGATCCGTTGAGCTGTCTGAAAAAGCACGGCATGGTAGGGGTTCCATAAGCACTTTCTGTACCCCACCCTCATCAAGCACCTTTATACCCACCACAGACGGCAGGAGTCTCACTGACCCCCTCACATCCACACCCACCCTCACTACGTTGCCCCCAATCAACAAGAAAACCAAAGGTCTCATTGACGGGCTTTCCAAATTTTTCACGCCATCGCCCTTGGGTCGCCGGTTGCGCGGTGAAGCGTCGGGCTCCTCGAATCAGCACAGGCCAAGGAAACGGGGCTATCGGAAACACCATGCCAGCATGATGACACCAGGTGTGAGGTTAAACGCCCCGTCTAGCGTTCTCCTTACCCCGTCCCCTTCGCAAGGACACAGCCCCATCTCGCTGAACCCCACCCAATCATCCTCGCCCTCCTCCGCCCACTCGCCCCACAGCTCCTCCTCCCAATCTAGTGGCCCGTCCCTTAGTAGCCTCCCAGGCAACAGCCAGCTAAAGGGACTCTTTGATGGACTGTCTCACATCTTTACCACTCAGGGACAGTCCCGACAAAAGGGACTCCCCAGCTACGCACCACCCAAGCGAGTGCGCCGCACACAGGACATGTCCACCTCACCCAAAATGTCCCTGCAGCTTCAAGGAAAGAAGCCTGTCAAGGGTTTCTGTAGTAAATTAGCATCTCTGGCCAGTTCAGCCTCAGGATGGCCGCCCAAGCGGGGCCGCCCGTTTAAGTCGGCGCTCCATTTCAAACGAACTCCCATCTTGAGAAAGCACAAGCTGCTAGGCAGGTTTAGGTTTAAGGCCTCCCCGCAGAGGGAGAACATCACACCAGGGAAGGGCAGATTGGCAGACGGACGA
>TCONS_00012787
ATGGTGAAACTGGCCAATCCCCTGTACACAGAGTGGATTCTTGAGGCTATTCAGAAGATCAAAAGGCAGAAGCAGCGGCCTTCGGAGGAGCGGATTTGCCATGCTGTCTCATCTACACGTGGACTAGACAAGGGCGTCGTACTTCATCAGCTGGAGCTCGCTGTGAAGGATGGATCCATCCTTAAGGTTACCAGCAAAGGGTGCGCTTCGTACAAAGACCCGGATAACCCAGGAAGGATTACGCCTTTCAAGTTGGGAGGCTCTGGCACGGTCTCTGTTGGATCTGTGATACCTGCAGGAGATCTGCGTCATGTGGATTGGAATAAAATCCTTAGGAGGGCTATTGAAGGTCTGGGCGTCCCGTCTGGCTCCTCTCTAAGGAACATTGAGAGATTCCTTAGAAGCCAGGGCGACCTGGTGAATGTTGTGGCAAACCCCAGGTTTCAGCAGAGGCTGAGGCTAGCTGCTAAGCGGGCGGTTAACAACGGGCGCCTGCTCAAAGATGGGCCGCTCTACAGGTTGAACAGTGGTGGACTTGGAGGAAAGTCTTGCTTCAGGAACGTGGGGGTCTTTGGTGTCGACCTCCCACCTGTGACACTACTCCCCCATGAAAGAGACCAGCCACGTGCTGACCCCATACCCATATGCAGCTTCTGTTTGGGCACAAAGGAGTCGAATCGAGACAAGAGGCCAGAGGAGCTGCTGTCTTGTGCAGACTGTGGAAGCAGCGGCCATCCATCATGCCTGAAGTTCTCCGCTGATTTGACTGCAAATGTCAAGGCCCTGCGATGGCAGTGCATCGAATGCAAAACATGCAGTTCCTGTCAGATTCAGGGGAAGAATGCTGACGAGATGCTCTTCTGCGACTCCTGCGACAGGGGTTTCCATATGGAGTGCTGTGACCCACCGCTCTCCAGAATGCCAAAAGGTACATTAGGCCTTTGTTTGCCGCTGTGGGTTTTTCCATTCTCAAGGTGA

Function

symbol description
kat6b Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation; nucleosome assembly; and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Is expressed in forebrain. Human ortholog(s) of this gene implicated in bipolar disorder; blepharophimosis-intellectual disability syndrome, SBBYS type; breast cancer; and leiomyoma. Orthologous to human KAT6B (lysine acetyltransferase 6B).

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016573 histone acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-000607-52 Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation; nucleosome assembly; and regulation of transcription, DNA-templated. Predicted to be part of nucleosome. Is expressed in forebrain. Human ortholog(s) of this gene implicated in bipolar disorder; blepharophimosis-intellectual disability syndrome, SBBYS type; breast cancer; and leiomyoma. Orthologous to human KAT6B (lysine acetyltransferase 6B).

Ensembl:

ensembl_id ENSDARG00000055429

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012786 False 1938 mRNA 0.55 6 24881272 24906307
TCONS_00012787 True 978 mRNA 0.53 4 24885081 24906307

Neighbor

gene id symbol gene type direction distance location
XLOC_006626 kat6b coding downstream 747 24871050 ~ 24880525 (-)
XLOC_006625 AL929334.1 coding downstream 10987 24830737 ~ 24870285 (-)
XLOC_006624 slka coding downstream 54665 24781188 ~ 24826607 (-)
XLOC_006623 sfr1 coding downstream 135984 24742724 ~ 24745288 (-)
XLOC_006622 erlin1 coding downstream 163654 24701406 ~ 24717618 (-)
XLOC_006628 adka coding upstream 11789 24918096 ~ 25199260 (-)
XLOC_006629 NA coding upstream 303851 25210158 ~ 25284716 (-)
XLOC_006630 plaua coding upstream 390950 25297257 ~ 25305179 (-)
XLOC_006631 itprip coding upstream 497106 25403413 ~ 25408387 (-)
XLOC_006632 tial1 coding upstream 565698 25472005 ~ 25484752 (-)
XLOC_006471 BX537274.2 misc downstream 14616367 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 24055047 825904 ~ 826225 (-)
XLOC_006619 NA non-coding downstream 258047 24590420 ~ 24623225 (-)
XLOC_006620 AL831745.2 non-coding downstream 274645 24602410 ~ 24606627 (-)
XLOC_006618 AL831745.1 non-coding downstream 293052 24585224 ~ 24588220 (-)
XLOC_006617 NA non-coding downstream 303250 24577265 ~ 24578022 (-)
XLOC_006616 NA non-coding downstream 306526 24573086 ~ 24574746 (-)
XLOC_006633 BX005252.1 non-coding upstream 624227 25530534 ~ 25530648 (-)
XLOC_006640 NA non-coding upstream 870082 25776389 ~ 25778815 (-)
XLOC_006643 NA non-coding upstream 940225 25846532 ~ 25853311 (-)
XLOC_006644 NA non-coding upstream 1103190 26009497 ~ 26703804 (-)

Expression


Co-expression Network