ccdc24 (ccdc24,LOC107657456,LOC107599905)


Basic Information

Item Value
gene id ccdc24
gene name ccdc24,LOC107657456,LOC107599905
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15559663 ~ 15579706 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU18373
ctgatctttaaaataaactttatttaccATTTCAAATTGAACAGTTTACAGCTGACATGACTAAGACAATTTCAATGCTGTTTGGCCCTAAAATTGAAAAGACACATGGTTAGATACTGTACGTTTGATAAAGTACTGAGCTCATGTCATTGTGCTTGTCATTCTACTTCAGTTTTTTATATTGCCATGAGCacaaaagtacacacacacatacacactatatTGTAAAGTCTTTCAGGATGCAGGGCACGGGAGAGAAAGAtgtaattttttgcattattttctgTTGCTTTCAAACACGTACATGTTTAAAGTGCCGTAACAACACGAAAATACATCATGCTGTTTACATTAACCAAAATAATTCACAGTTTCAACTGAGATATGCTGATTCTGTgtatagttttaattaatacagCAATAAAACTGTGCTCATTTCCATCTTGGACCTAGAggtatttgtgtttatattttccaCAATtatagtttttctgttttgcttgTTCTAAACACAGCCCTGACACGTTTCCTTAAAAGGTGTACGCCGTCACAATTAAATTCACGTGAAGAAATAGCCAAATTAGGAGCGAAACCAATTTAAAAGCGTTCTTTTCAGAAGCATTACATACCCAGATAAAATTATGTTACATAATATcgatcattttaaatgcatttccaaaaaaTTCAAAGATCGGTATACGTGTTAAAACATTCTTTCCAGGCGATCAAATGTGCTTTCTTTTTTACGTTGTGCATAATACATGAAACTGGATCACAGATCGACGGAAATGTTCTTAAAGGGTTTGCAGCACTACAAATACACTTGTTTACAATACTGAGAAGAAGATATAACATTGTTGGCTTTAGACTGTGTCCTTCTTCATCAATAATCCATTTTGTTTGACCAGATGTTGatgtaaaaagcatttctgttttgttttttttcaagtttcagTAAAAAGCCTTGGTTTGGCAATGATTTTGAGATCAGCtggtttgagaaaaaaaaactgtagtgtCACTGAACATagctaaaaatgtttacaattgatggtaaaatacagttttagtactataaaaataaaaaggaaaaatctcTTACAAAGGTAGGTTCTGCTTGTTAAAATGGCACAAACGGATAATTACATACTGATTAAAATTACATGACATCAATATAGTGACACTAACATGAACTAGGTTTGACTCAGCAGTTGAACGTCCACTACACCGAACACTCTGTACACAGAACATTAGCTAAGTTACAATAtgaaatgaagtaaaaacaactaaaaataaacccCACTACAGCAACCCACCctgataaaaacagaaaacacaaacatacacaacagttgagtttttgtctttttttttgtttttttttttacattactgtaCAACGGAGAGAGATGGGGAACAGTGCGAGAACAGCACTGATGCATGACGTGTCTATTGTTAAAAAGAGTCTGCATGTCAAGGTCAAAATCCAGGTCTGTTCACATAGAGACAGACACATGGTCTTCACGCCACGTTCAAGCTCTGAGGACCACACATCAGAAAAATGAGAGGGCTTCAATCTTGTGCATTCACATTTCCGACAGCGATTAATCGTACTGTAGCTACTGCGCACGTAGCCAGCTAAAGTGAACCAGTAAATAAAAGTGCTGTTAGTCTCACGTCGCCTAAACTGCTGCTCTAATCTACTCCACTAACTGTCTAACAGAGGAAAAGCTAGAGTTTGTGACCTGCAGGTATGGTTGTGCTAAGACCAGTGAACCTCTAACTACTCCCCTGAGTGTCCGATACCTCCTGTTAGGCAGCAGGGTTACTTTTATTCTTCTCGCTTTTTTCCCTACTTCTTAATAGTTAGattgtgttttgtatatttttggataaaatcttaaaaatatatatatatatagatcataCCTTCAtgcaaagattaataaaatgtacaataacaaTGACGTAGACTATTATGCCATCAAGTTTTTGAATACTGACTCTTTATGTGACCTGCTCCATCGTTTTGACTCATTTTGGCACTTTATTCATTGAAAGAACAATCTCAAAAatcaaaactttcaaaaacgTCATTTATGATCCAATGcggaaaattaattaaatggtgCTGTCATAATAGAGCCTTTTTGACAGACCACGGAGATTTATTCAATCTTACTTTAAGGCATCAATGAGTGAAATATAACGCGTTTACGgttatacatttacaattttactaACATGCTCTTTTctacgttttctttttttggacattGAATGACTTTCCTGAGGTAAATGTAACATCAGGTAATGTTCACGAGCTGTTTAATTCACATCTTTCTGCGACATGAAACGTGATCACATTAGACGTAAAATTTAGTAAGCGTCGTTCGTTTTTGCGCTATAactagtaaagaaaaaaagttgatcAGTTCGCCCGCTCTCGGCGCTGCCTTTAAAATGTGAGGCAGCGTTAGCGATCTATGATGTCAAAATGACATGTTCGAATTTCTGAAAGCCCAAATAAGCTGAGACTTTGTATCATCAAAATCAATgcaacaaagcattttttttgcctCGTTCTGACTCAAAATGACAGAGCACGTCACATACTGCATTCCTCCTCGCACAACACAGGAGAGAAATACCAAATAAACTATTTTGACTTGACTATATACAAAGATTCACTGTTTAATCAGAAGTCTCAATACGTGATGCATCAGCACATTAGCAGCTGCGTTGCCAGACTCCCCGTTAAAAGGCGTCGGGCAACATCCCAGACAAATTCACAGTGTAACCAGGACTCTTCATGAATATGTGCCACAACAACCGTATGCATCATAAGGGGCCTTATAGAAACGTCACTGGAATGATATGATATGCGGCATCTAGCCATACCAACAATATGACCAAAATTCTCCATACCAATATATCCCCTCTCCACAAAACCAAAACGAAACAGAATGCACCACATTAACGTAACATGCTATGGTTTCTACCATGAGCATTGGATAGTTTGGCCTTTTATGCGTCTAGCAAGgctattaatgttgttttaaaatattaggcCAGAAAAGTTGACTTCTCCGATTTCACCAACTAAGCGATTTTTGACTGATGCTGTTTACTTCTGATCGTTCCACATGCAGTTACCCTTTATTCAAATGTTCAATGACATGACTAAGCATAGCCAGATGCCtttaaatgacacacacaccaGTTCAAGTCTCTCAACACACATAGAcaacaaaaaatgcatacaaacacaccAACTAAATCAGAACACAAAGGTCTGTGCACATGTTTTTGGTAACATGCCTCTTTTTCCGTGTAGAGCGGGGTTAGTGTGCATACTACAGTACTGAATCTAAAGAGGAACTAGCTGCTTCGGTTATCGCACACATGCTCCCCTCGCTCAGGAGATGCCTCGGCTCGAGATGCCCGGAAGACTAGACAGATTTGGCATTTCATGTGGACGCTCCTACATGAAAACCCCTCTCCTTCATGTCAAACACTCAACATCAGCAATAAATCATCTCAAGGTGTTGGAAAATGTTTTGCGAAAAAGCAAATTGTGTGTAACCCTGAGAATGGGCTTGAGAAGTTATATGCCTCGGTCCAGATACCTCAGTCAGTAAGAGCTTAAGACCAAATATCCTTCGTTTTGTATTTGTGCTCTCACTTAAATGGAAATAAAGTTGATATTCTCTTGGCCtatgctttattatttattggtttatcGGTATCAGCCAGTCTACTTGACTAGATTTCCAGTAAATATTGGCGCTAACACTTTTGTCAACCGGCCAATGGATAATATACAAGTTCTGTTTCGTAGTTTTAGGTGGATTTTGAGTTATCACGGTGTTAAAAGGTCATTTAACATGCATTATGTCATTACATTGACCATCAGCCACCCTGCTTTCAGACACCAACAATGGCCATTGAAAAACCATATCGGCTTGTGGATGAGATGGTTCCCAAACAAGAAAAAGGGTACAATACAGCAACTGAAAATAACACTCCATTTAACAGTGCCTTTACAACATTGCCACAAAGAATATTTGGTCCTCAGCTATTAAACCTGACCAGCACTGCCGCCACTATACACACGAGCCAAGTCCCACTGTAGCTCCTGCTGCCGCTACAGTCACCTTTCCAGACTACTCAACACAGAGTGAAAATATTGTACAATGCGCTATATACACACTGCGTGTATGCAAAGACCTCCTGTATATGAACACGtcttttttcttgtctttttaaaaaaactgcaatattaaattatgtcaacaaaaagaaaaaggttttgGATGACAACCAATTTCTCTAGAGGTTAGATTTCATAAAGCCCTTACAATATGTAAAGGTCTCCAGCGAGAGTGGCCTGTCCTCTTTCTCCTTGAGTTTCTCTTTACCCTCGTCCTTCAGGTCTTCTTTGAGAGGGCACACCTCCACTGACTCGGGGCCTGTGGTGGCGTATCGGCCCTTGCGGTGCTCCTGGAGAGCAGGGCCCCAGTCTGGGTCAGGTTTCACAGAGTTCTTCAA
>XM_043259972.1
CTCTGATACAGGAAGCCACGATTGTTCTGCTAGGTTCCCCCCAGTATGGACACACTAAAAGCATGCCAGTGATGATGAGCTTTTGTGCTCAGCTCTGGAAATAGCGGCCACATGGACCACTTCCAACGCCAACAATCTGTGTGGAATTTAGTCAAGGAAAATGTTCCCTACTCTGAGCTTCCCGAGATCCGAGCTCTGCTGGGAGAAACACTGATTGATACATATACAGAGTTATATTCAGAGGTGGAGATGTGGGAGAAGATTTGGCAGCAGCTCCGTTGCTCAGAGAAGGGCAGCAGGCCAGGAGCCCCCATATTCCCTCTGGCTGACCCCCCAGCTGTTAAAGAGCTGCTAAAAGCAGAGATTCAGTTGTTGCTGCTCACGCTAAGAGAGAAAGCAGCCAGACAGGGCAGGGATGAAGAGGAGCTCATGGCCCGGTACAGTCCTGCTGTGGTGAGTTACGCACTGGGCACACAGAGACAAGGGAGTCCAGGCAGCTGGTGTGAAACAAAATCACCTTCCAGACCCCCGTCAAGTCTGAGCGAGACTAGAAACAGGTCGGTCTCCAGCCTCTCGTCTCACTCTAGCTGTGAAGATGAAATCAAGACTTTAAGACACAAGTTAAACATCACCCATATAGATGAGGTTGTGACCCATCTCAGgtcagTCATAATCGAAGAATCTGAAGCACTGAAAAGAGATGTGCAGGTCCTGCAGGAAAACCTTGAGGCCGAGAGAGCCAGTGCTCAGACACAACCAGCATCTCCAGAACCAAGTGTAGCAGAGCTCAAACAGGAACGGAGACTCATTCAAAGGGATCTGAATGAGCGGAGTTTAATAACCAACATCACAAATAAAAAGAGTACCAGAAACCCACAAATCCACACAAGAGATAAACGCAAACCTGCTCTCTCTGCAAATGATTTGGAGGGTCTGAAATCAAACTCAACAGTTTCCTACTTGAAACCATATCCACCCAGAGACCTAAACCACATCAGGAGTGATCCGACCCCAATGAGCTCCTCAAGCGCTGAATCCACAAACCCCAtttctgctttggaacaaaAGGACAAAGAGTGCAAGCACAGGGCAAATTCACTAAGAGCTTCAGCCTTCAGACTGGTTCCAGCAGCCTCAATCAAAGCATCCGGATCCGTCAAAGACTTCCTTCTAAAGATGGAGGTGACTAAAAATAGTGACCTAGTCTGTCTCCAGCCCGCTCCTCCTGCAGTGCAGAGAACAGCCAGCAGGGGACAGCTGTGCGTTCCTCAGCCTGAAGGTCTGCTCAGTTCTCTGTGAGAACCACCGTATGCAGCTCTTCACCGTCAGACGTCTTAACAGTTCAGTGTACataggaagaaagaaaaaaacggcgcgataaaacacaaaaccacaatctgatctttaaaataaactttatttaccATTTCAAATTGAACAGTTTACAGCTGACATGACTAAGACAATTTCAATGCTGTTTGGCCCTAAAATTGAAAAGACACATGGTTAGATACTGTACGTTTGATAAAGTACTGAGCTCATGTCATTGTGCTTGTCATTCTACTTCAGTTTTTTATATTGCCATGAGCacaaaagtacacacacacatacacactatatTGTAAAGTCTTTCAGGATGCAGGGCACGGGAGAGAAAGAtgtaattttttgcattattttctgTTGCTTTCAAACACGTACATGTTTAAAGTGCCGTAACAACACGAAAATACATCATGCTGTTTACATTAACCAAAATAATTCACAGTTTCAACTGAGATATGCTGATTCTGTgtatagttttaattaatacagCAATAAAACTGTGCTCATTTCCATCTTGGA

Function

symbol description
ccdc24 Is expressed in axis; forerunner cell group; nervous system; and ventral mesoderm. Orthologous to human CCDC24 (coiled-coil domain containing 24).

NR:

description
coiled-coil domain-containing protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18373 True 4551 lncRNA 0.38 2 15559663 15564331
XM_043259972.1 False 1845 mRNA 0.45 9 15563884 15579706

Neighbor

gene id symbol gene type direction distance location
prpf4ba LOC107733882,LOC107599886,LOC107657448 coding downstream 303756 15248085 ~ 15255907 (-)
bfsp2 bfsp2,LOC107733884,LOC107730799,LOC107557028 coding downstream 329995 15223956 ~ 15229668 (-)
nrbp2a nrbp2a,LOC107733885,LOC107599881,LOC107657444 coding downstream 346465 15193555 ~ 15213198 (-)
puf60a puf60a,LOC107657443,LOC107718021,LOC107701012,LOC107599879,LOC107709765 coding downstream 366618 15180965 ~ 15193045 (-)
LOC122328939 NA coding downstream 370870 15188656 ~ 15188793 (-)
b4galt2 b4galt2,LOC107657457,LOC107599894,LOC107700994,LOC107557142 coding upstream 5811 15585517 ~ 15674874 (-)
atp6v0b atp6v0b,LOC102788333 coding upstream 96497 15676203 ~ 15682026 (-)
ptch2 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076,LOC107657459 coding upstream 190059 15769765 ~ 15796297 (-)
eif2b3 eif2b3,LOC107722074,LOC107599900,LOC107700990,LOC107720854,LOC107558289 coding upstream 223773 15803479 ~ 15833173 (-)
cenpl cenpl,LOC107720853,LOC107599910,LOC107657424,LOC107722063,LOC107700989,LOC107557192 coding upstream 276533 15856239 ~ 15860091 (-)
LOC122359617 NA non-coding downstream 6059 15547035 ~ 15553604 (-)
G12313 ccr9a,LOC107579348,LOC107733890,LOC107657446,LOC107730785,LOC107557055,LOC107700981 non-coding downstream 318837 15237959 ~ 15240826 (-)
G12308 NA non-coding downstream 336208 15223211 ~ 15223455 (-)
G12199 NA non-coding downstream 624638 14934769 ~ 14935025 (-)
G12175 epdr1,LOC107664036,LOC107558964 non-coding downstream 704494 14853694 ~ 14855169 (-)
LOC122356097 NA non-coding upstream 138922 15718628 ~ 15754422 (-)
G12567 NA non-coding upstream 719466 16299172 ~ 16299744 (-)
G12585 NA non-coding upstream 865257 16444963 ~ 16445224 (-)
G12619 LOC107722060,LOC107563589,LOC107658360,LOC107559063,LOC107678928,LOC107726916 non-coding upstream 917997 16497703 ~ 16498417 (-)
G12614 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107557223 non-coding upstream 923336 16503042 ~ 16504056 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other downstream 405674 15133971 ~ 15153989 (-)
faim2a faim2a,LOC107718029,LOC107701017,LOC107556958,LOC107657438,LOC107709826 other downstream 432172 15120587 ~ 15127491 (-)
adcyap1b adcyap1b,adcyap1,LOC107713980,LOC107686049,LOC107751550,LOC107664073 other downstream 949397 14578995 ~ 14610266 (-)
LOC122328470 ptbp1a,ptbp3,LOC107602545,LOC107674042,LOC107732511,LOC107584874,LOC107558691,LOC107658670,LOC107744247,LOC107729315,LOC107688524 other downstream 1995298 13553773 ~ 13564365 (-)
LOC122323969 cahz,LOC107550722,LOC107755757,LOC107664098,LOC107686019,LOC107585971,LOC107751363,LOC108432254 other downstream 2089400 13315229 ~ 13470263 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other upstream 645017 16224723 ~ 16268835 (-)
LOC122362257 LOC107658348,LOC107563587,LOC107678922,LOC107726920,LOC107722065,LOC107559085 other upstream 903454 16483160 ~ 16512019 (-)
G12658 lamc1,LOC107678923,LOC107726890,LOC107557259,LOC107722047 other upstream 1091870 16671576 ~ 16673710 (-)
G12839 NA other upstream 1226555 16806261 ~ 16806738 (-)
G12841 NA other upstream 1242919 16822625 ~ 16823073 (-)

Expression


Co-expression Network