G12607


Basic Information

Item Value
gene id G12607
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16690926 ~ 16693619 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU18628
CGAGGAACCACCACTATCCCGAAATCCCCCACAATCACTTCCAtctagaaaaatataataatcacatatttagttcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataccgtaaattctggactataagccgctacttttttcataggttttgaaccatgcggctcatacaaaggtgcggctattctgcagatttttacCCACCACTAGGGGCgctctaaccggaattagaatcaaaactaagacaaaataaatgcaaagaagaatacgctagttcctctttagcagatataagtcggtATATGACAGCAGATATGACACGGAAAGCGAGACTGATGGAGACAGATGTGACGAAGCGCTGCTGAGTTTGTTCAACTCCGACACTGAAGAAGACGACTTCGTGGGTTTCAGCGAAGATGGTTAAGGCAAACTCAATATTTTCTGATGATGACTCAAAGTGACAAGCAAGAACTGATTCGAAAACCAAAAACCAAGGCAAGGAAAATCGCATCGTCTCACCAATTTCCTCGTAACGCATTGCAGTACCAAGGTTGGCATTTTCGTCtgttcggaaaaaaaaaaaaaagcagaaaagcatGAGAGGTCACAGGGATGATTGATTCTTTGGAAGTGTGAAGAGTATGAATGATTCAGATTAATTATACGGAATTACGTGATTTCTACGTGAACTAAAACCACAAAGCTGTGGCATGTCTTTGTtgctgacattttttattttgacacaaaTTGAAAGGGGTTGAAATGgtgacattaaaatgacatgctTGAAAGTCGGAGGTGGTTCATTTAATGCACCCATTTggtgtgattaattattttaaaatgcaatagaaaatgaacacaaaagtcataaataaataaatataatccgTGGTTTTGTCTGGCATAATGTAAAGTCTTGACTCATCTGgggttttttaaatttgtatatgtgatttattgtgatcaatattattaattaatttatgtgataaatacagttaaaatttttattcatttccagCCACTGTAAACATTAAAGGAC

Function

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18628 True 1075 lncRNA 0.40 2 16690926 16693619

Neighbor

gene id symbol gene type direction distance location
lamc2 LOC107722066,LOC107658364,LOC107563561,LOC107678924,LOC107726891 coding upstream 1554 16677139 ~ 16689372 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC107722047 coding upstream 20597 16625845 ~ 16670329 (+)
dhx9 dhx9 coding upstream 67893 16613776 ~ 16623033 (+)
rasal2 rasal2,LOC107678931 coding upstream 78460 16561384 ~ 16612466 (+)
ankrd45 ankrd45,LOC107563586,LOC107658305,LOC107722043 coding upstream 143914 16545336 ~ 16547012 (+)
smg7 LOC107563557,LOC107722067,LOC107658366,LOC107557277,LOC107678926 coding downstream 7458 16701077 ~ 16718102 (+)
LOC122361612 NA coding downstream 28509 16722128 ~ 16723558 (+)
LOC122356618 LOC107738189,LOC107684434,LOC107591326,LOC107559148,LOC107706401,LOC107659373 coding downstream 150102 16843721 ~ 16847555 (+)
ing5b ing5b,LOC107738258,LOC107706410,LOC107591443,LOC107557337,LOC107659430 coding downstream 301070 16994689 ~ 16996615 (+)
pak2a pak2a,LOC107738196,LOC107684413,LOC107659428,LOC107706409,LOC107557297,LOC107591323 coding downstream 303470 16997089 ~ 17009227 (+)
G12530 pappa2,LOC107568983,LOC107722077,LOC107558342,LOC107658303,LOC107678935,LOC107726923 non-coding upstream 426006 16263774 ~ 16264920 (+)
LOC122359940 LOC107743936,LOC101883431 non-coding upstream 656018 16032757 ~ 16034908 (+)
G12491 NA non-coding upstream 812522 15878134 ~ 15878404 (+)
G12451 NA non-coding upstream 879533 15810893 ~ 15811393 (+)
G12432 NA non-coding upstream 886005 15723086 ~ 15804921 (+)
G12669 NA non-coding downstream 90281 16783900 ~ 16784544 (+)
G12729 LOC107678904 non-coding downstream 133411 16827030 ~ 16829326 (+)
LOC122356672 NA non-coding downstream 136489 16830108 ~ 16839463 (+)
G12730 NA non-coding downstream 137030 16830649 ~ 16831883 (+)
G12711 NA non-coding downstream 145952 16839571 ~ 16842431 (+)
LOC122323293 NA other upstream 234394 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 422129 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 815162 15860179 ~ 15875764 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 1441677 15241797 ~ 15249249 (+)
ackr4a LOC107664061,LOC107751559,LOC107556724,LOC107751558,LOC107751560,LOC107713978,LOC107586293 other upstream 1907949 14776322 ~ 14782977 (+)
LOC122361622 NA other downstream 30995 16724614 ~ 16776351 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 338520 17032139 ~ 17039903 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 668626 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 873222 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 913633 17607252 ~ 17608092 (+)

Expression


Co-expression Network