G12682


Basic Information

Item Value
gene id G12682
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16722696 ~ 16723505 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU18768
tGGCTGATTGTATAACCTCATTTGGTTGTTGGGGTCAGATCAAGTTACAgttgaattgaatttttaaaatatgaatgccTTCACGGTCATCATTACATTAACTGCGACACATTTAGCAAGCAGAATTCTCAGACCTGTCACAAGAAGGTTTATGGAGTTCATTTTTGGATCccCAGCGTTTATGAACTCTTCAGAAGTATCATTATTTGTTTCACAAGACTGTGCAGTCTGTATTTCAG
>TU18769
tGGCTGATTGTATAACCTCATTTGGTTGTTGGGGTCAGATCAAGTTACAgttgaattgaatttttaaaatatgaatgccTTCACGGTCATCATTACATTAACTGCGACACATTTAGCAAGCAGAATTCTCAGACCTGTCACAAGAAGGTTTATGGAGTTCATTTTTGGATCccCTGTTACGACATGAGGTTCAAGAGTCTCAGTTTTATCTGCTTCTTCTTTATCCATTTGACACTGTTGGATTTTTTTGCCATTGAATCCagcaaaataatagtttttggtCGTTGCGAAGATGGGTGCACCGCTGACGGAAAGACTTTCAGATTCTGCACCTTTTTCAGTCAAAATCATAGTCTTTTCTACAGGAAAGAACCCGGCGGCCAGACAAATATCCTGTCCAGTGCCCGTGAGAGGGGACAATATGGACAG

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18768 False 239 lncRNA 0.37 2 16723134 16723505
TU18769 True 429 lncRNA 0.47 2 16722696 16723505

Neighbor

gene id symbol gene type direction distance location
nmnat2 nmnat2,LOC107658365,LOC107563562,LOC107678925,LOC107557267 coding downstream 24073 16688625 ~ 16698623 (-)
tnn tnn,tnw,LOC107722078,LOC107658358,LOC107678933,LOC107726927 coding downstream 237492 16457757 ~ 16485204 (-)
brinp2 brinp2,LOC107658350,LOC107562711,LOC107722070,LOC107720848,LOC107700985 coding downstream 698046 15948412 ~ 16024650 (-)
cenpl cenpl,LOC107720853,LOC107599910,LOC107657424,LOC107722063,LOC107700989,LOC107557192 coding downstream 862605 15856239 ~ 15860091 (-)
eif2b3 eif2b3,LOC107722074,LOC107599900,LOC107700990,LOC107720854,LOC107558289 coding downstream 889523 15803479 ~ 15833173 (-)
LOC122356645 LOC107709317 coding upstream 124186 16847691 ~ 16849363 (-)
LOC122324462 LOC107709317 coding upstream 128432 16851937 ~ 16852961 (-)
LOC122327065 NA coding upstream 132610 16856115 ~ 16856779 (-)
LOC122327073 LOC107709317 coding upstream 133956 16857461 ~ 16858067 (-)
LOC122355552 LOC107709316,LOC107577925,LOC107658332 coding upstream 135063 16858568 ~ 16859696 (-)
G12620 NA non-coding downstream 179925 16542483 ~ 16542771 (-)
G12614 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107557223 non-coding downstream 218640 16503042 ~ 16504056 (-)
G12619 LOC107722060,LOC107563589,LOC107658360,LOC107559063,LOC107678928,LOC107726916 non-coding downstream 224279 16497703 ~ 16498417 (-)
G12585 NA non-coding downstream 277472 16444963 ~ 16445224 (-)
G12567 NA non-coding downstream 422952 16299172 ~ 16299744 (-)
G12708 NA non-coding upstream 59639 16783144 ~ 16784555 (-)
G12830 NA non-coding upstream 65750 16789255 ~ 16789724 (-)
LOC122356677 NA non-coding upstream 70843 16794348 ~ 16795778 (-)
LOC122356638 LOC107558522,LOC107726897,LOC107558467 non-coding upstream 76926 16800431 ~ 16801951 (-)
LOC122356666 NA non-coding upstream 96332 16819837 ~ 16822548 (-)
G12658 lamc1,LOC107678923,LOC107726890,LOC107557259,LOC107722047 other downstream 48986 16671576 ~ 16673710 (-)
LOC122362257 LOC107658348,LOC107563587,LOC107678922,LOC107726920,LOC107722065,LOC107559085 other downstream 210677 16483160 ~ 16512019 (-)
pappa2 pappa2,LOC107722077,LOC107568983,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 453861 16224723 ~ 16268835 (-)
ccdc24 ccdc24,LOC107657456,LOC107599905 other downstream 1142990 15559663 ~ 15579706 (-)
smarcd3a smarcd3a,smarcd3,LOC107657439,LOC107599876,LOC107709803,LOC107556978,LOC107718026,LOC103039772 other downstream 1568707 15133971 ~ 15153989 (-)
G12839 NA other upstream 82756 16806261 ~ 16806738 (-)
G12841 NA other upstream 99120 16822625 ~ 16823073 (-)
LOC122327046 NA other upstream 101497 16825002 ~ 16825808 (-)
LOC122327057 NA other upstream 102580 16826085 ~ 16826547 (-)
G12843 NA other upstream 102634 16826139 ~ 16826573 (-)

Expression


Co-expression Network