G12729 (LOC107678904)


Basic Information

Item Value
gene id G12729
gene name LOC107678904
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 16827030 ~ 16829326 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU18819
AACACACTCAATGCGCTGAcaaaaaagactgaaatatgACAAAACATAGATTGCATACTGGTGAGAACTGTTAGAGAGGTTTACTAAATGCATATCCTTAAAttctggttttatttatttatttacagtattctGTTTTCTTCAACACAAGGTTAGTTGTTGCTAAGGCAATTAAATCTCATGCTTAATCTTTGGCTCTAAAATGCTGGATCAAAATGCTCAAATCAACATGCATGATCATCCACTGAGCAAAGACACTGAATTCTGTTTTAGTGTGTCAggtttttgtacagtgtgtgtgtgtgtttgctgtcacTGTGGGCTGCAGGGCGCAGTAGTACACAGCAGAATCAGTTAATGCAGCGCCAGTGATCTCCAGATCCACACGGCTTTTCTCCCCGTTTAATCTAGCTGATATTCCAGGAATTGGAGGATCAGCTGGTATGTTAAATGCAGCTTCATTGACCAGAAACAGGAAGTCCGGTCTGGATCTCGGGTACTGACGATACCAGTGCAGAGCATCTGTAGTAGCTGATCCGTTGTAATTGCAGGACAGAGTGATTGTGTCCCCTTCTGAGAAGAATTCATTAGGAGAGACTGGAGCTATTCCCTCACTAGAGACATCACCTAGGAAAAACAGAACGATAGATGGGAATAATGAATGATGAACAGAAATACAGAAGTACTTTCTTAGTAGTGTGTTCTTAGtaatgtttatttgattaattgcatGTATCTTACCGGTTAAAAGGGAGACGAGGCTCAGACAAATTAAGAATAGCATTGCTGACAAAGAGTGAATGAAATCTATCTGAAACCTATCTATGTTTGAAACCGCTGCATGCCTGAAATAATTGCTTTGGATCTCCTCCCCTTATGTACCCTTGAAGAAATGGCTTggtttgtattcattttttggtTTAAGACCGCCCTCTTATGGATCATTTTAGCCATTGCATCACACATTTCTATACATTGGCCTGGAGAAGCACATCTCAGTAAAATATTCATCAGAGAGGTCAATTGTGAGCATTGGAACTTCTGCCTGTTTAGGAAGAACATAATCACCTGGTTCTGCTAAGCATTACATATCAAATCACATTACAGTGCATACAACTTGGTGTATGTTAAAGGGATAAacttgtgtatatgtatactttCTGAGATACCTATTTGTATGATTGCAGCCGTGCATTTCTGCACTTAAACAGTAATATGTTCATGTAAAAGTGGTTCACAAAGGTCAAAAACTCTCACTGAGGAAGTAGGGGAACTTTTCAATAGTTACACTTTAGTACCTATTAAgttcaaatatatacactttaagtactaatatgaacctttaaggtaccaaaatggactcTTTAGATACAAACgcatacattttgaaaaggtaccgcgcCAGTACCCTATAAACCAGGGCTATggagtttatttgaaatattatttaaaatagtgatTAGGTTACaattatttcaacacatttttcCACATGGATTATGGCTGGAGGTTTTTGTACAGTGTTGTTATGTGTTGTGTCACTGTGGGCAACAGAGCACAGTAGTACATGGCAGAGTCTGTAACTTCAGCAGAGGAGATGATTAGATTCACAATCTTGTCTTTCGTACTCATTTCACCATCCAGTCTAGGAATAGGGGGTTTTGCGTGTATTACGGTCTTCTTGGATGACTCGACCACAAGGAGCAGAAATTGCAGTCCAGATCCAGGATATTGTCGATACCAAAGTAAACTCTGTACAGTGCCATTATATTTACACGACAGAGTGACTGGCTTCCTTTCAGTAACTTGTGTTCTGTCCTGCAGTGGTGCTATTTTCTGCGCAAAGCATTTATCTGTAAAATCTGTATAGAACATATTagtaaaaagaatatatataaataggtAGTTGGCCTATCAATTTGTCCTATGGagtgacagcaaaaatgtaaaaacaaaaaaccctcTAACGTTGAACATAAACCTCTCTACACTTGTAAAGAAGTAGAAGacacatttttctcatgttatttgtatgttttctacatttttttttctgtcgcACCATAGGACACAGTTAAATTTTTactacacacacagacacatatgtGTATACGTATAAACTTTTACTTACCCTGTATTACTAACAGCAGACTTAGAATACACAGGAACGTCATGACTGCACcgttaataaaactgaaatgaaatgctttcATGACTCTGTCTCAAAGCTCCACCCACAgtctaaaaaaaatctgcaagaAGATTCTGCAGTGCATTGCATTTTCTTCTTGCTTTAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107678904

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18819 True 2297 lncRNA 0.38 1 16827030 16829326

Neighbor

gene id symbol gene type direction distance location
LOC122361612 NA coding upstream 103472 16722128 ~ 16723558 (+)
smg7 LOC107563557,LOC107722067,LOC107658366,LOC107557277,LOC107678926 coding upstream 108928 16701077 ~ 16718102 (+)
lamc2 LOC107722066,LOC107658364,LOC107563561,LOC107678924,LOC107726891 coding upstream 137658 16677139 ~ 16689372 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC107722047 coding upstream 156701 16625845 ~ 16670329 (+)
dhx9 dhx9 coding upstream 203997 16613776 ~ 16623033 (+)
LOC122356618 LOC107738189,LOC107684434,LOC107591326,LOC107559148,LOC107706401,LOC107659373 coding downstream 14395 16843721 ~ 16847555 (+)
ing5b ing5b,LOC107738258,LOC107706410,LOC107591443,LOC107557337,LOC107659430 coding downstream 165363 16994689 ~ 16996615 (+)
pak2a pak2a,LOC107738196,LOC107684413,LOC107659428,LOC107706409,LOC107557297,LOC107591323 coding downstream 167763 16997089 ~ 17009227 (+)
klhl6 klhl6,LOC107591321,LOC107706408,LOC107684416,LOC107558769,LOC107738218 coding downstream 180240 17009566 ~ 17014352 (+)
ptx3b LOC107591444,LOC107738195,LOC107684438,LOC107659376,LOC107559106 coding downstream 195857 17025183 ~ 17029802 (+)
G12669 NA non-coding upstream 42486 16783900 ~ 16784544 (+)
G12607 NA non-coding upstream 133411 16690926 ~ 16693619 (+)
G12530 pappa2,LOC107568983,LOC107722077,LOC107558342,LOC107658303,LOC107678935,LOC107726923 non-coding upstream 562110 16263774 ~ 16264920 (+)
LOC122359940 LOC107743936,LOC101883431 non-coding upstream 792122 16032757 ~ 16034908 (+)
G12491 NA non-coding upstream 948626 15878134 ~ 15878404 (+)
LOC122356672 NA non-coding downstream 782 16830108 ~ 16839463 (+)
G12730 NA non-coding downstream 1323 16830649 ~ 16831883 (+)
G12711 NA non-coding downstream 10245 16839571 ~ 16842431 (+)
G12753 NA non-coding downstream 63455 16892781 ~ 16893081 (+)
G12759 si:busm1-101l20.6 non-coding downstream 71591 16900917 ~ 16910872 (+)
LOC122361622 NA other upstream 50679 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 370498 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 558233 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 951266 15860179 ~ 15875764 (+)
LOC122357435 LOC107733881,LOC107599885,LOC107657419 other upstream 1577781 15241797 ~ 15249249 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other downstream 202813 17032139 ~ 17039903 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 532919 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 737515 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 777926 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 950013 17779339 ~ 17782364 (+)

Expression


Co-expression Network