G12823 (map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295)


Basic Information

Item Value
gene id G12823
gene name map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17133077 ~ 17134888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU18944
tgacattttaatgttttaattcatataGTTCATATTACATATACGTATACACGCTTTCCTCTATGTGAGTGTAGCAATACATGGATTCAAAATTCTTGCACCCCACAAACTTACCATTCTTTTTACAGTGCTGAATTAAggagatgcattttaaaaaataaatgaatataggCCAGTATGCCCTACAGCTCTCAGTATTTAACAGAAACACAGTAGGTACAGTAGAGCCTCTGTACTACAGTTACTGTACACTTTGTGTGTCAAGCTTCTACTACTCATCACATTTCCAATTGGGATGAACTAAAATATCTGTTTCATGCCGTCATATTTCTGAAGATTTCATAGTGATATTCTATTATAGTGTACTGCATTCATACAATATTTGTGTGACTTAGTGTGAAGTTACTGGTCCCCAAACAGTCGAAGGGACTGGGCAATGGCTTAAACACCATCCTTTAAGAGCAACCCAAAACAAAGTAaatctcaaaatataaaaatagctcTCTTTGTAATTATGTTGTGTGATCTGATCTGTATAgacatttgaaatagaaatatctGTGCCATTCTTAATCTAACCTCCACTGGCACTGCtaatctgtttctctttctgaaTGACTGTTTCCAGTGATCTTCATGCAGAGGTGGGCTATGTTGAAGTTTGCAGTATTTAATTAGGACTATTTCGGCAAAGTGGGAATCTAGtaaacacttttaataataaaccaGTGCAGTTACACTCCTAGAGTAAatgcatctatatatttttattcaatacttgtgatattattgtgtattttagGCCCCAGACACCTGCTAAGAAACCTTTCACAAACATAATATTTGTTTGATAAAGCATCTGccatgaacaaaaaaatgtaaagtggcAAAAATGTGCATGTGCAACTTTAAATAAGCATGGGATTACACCAGGCTTTCTCAACCCTGGTCTTTGAAGGCTACTGCCCTGCATATTTTAGCTGCAacattaatcaaacacacctgaaccagctaattaaGCTAAGTTTGATCAAGGTTGGAGCataactctgcaggacagtggccctccaggaccagGGTTGAGAACCCCTGGGATACACAAAGGGTATGTCAATCTAGCAGAACTCTACTTTACAAGCAGGGAATGTCTCCTCCTGCATAGCCACAGTGCTGTTGCTGCCTAGGACTGTAATTCCCAGCTGCCGTTGTTTTTCTTGGGTTTCCCGGTACCACTCATGCATCATAAGTGATTCAAATGTGGGAATCAGGGTCACCAGCACGTCCTCAGGCCATACAGATTTTCCTTCTGTTAATGCATCCAGAATGGACCTCATCAAGCCTTCCTTAAGTGTGTCATCCCCACTTATTATGTAACAAGATGATCGTAAGCGGCAAAAGAACTCAACATCAACAGTGGAAGCTGCATGGCTTGATGGAAGGTAAGCCAGGTCCAAGTATATTGAAGTGCCA

Function

symbol description
map1sb Predicted to enable actin binding activity and microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization; neuron projection development; and regulation of microtubule depolymerization. Predicted to act upstream of or within apoptotic process. Predicted to be part of microtubule associated complex. Predicted to be active in several cellular components, including dendrite; microtubule; and neuronal cell body. Orthologous to human MAP1S (microtubule associated protein 1S).

NR:

description
PREDICTED: microtubule-associated protein 1S-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18944 True 1470 lncRNA 0.40 2 17133077 17134888

Neighbor

gene id symbol gene type direction distance location
rabgap1l2 rabgap1l2,LOC107706404,LOC107659372,LOC107684408,LOC107559133,LOC107591424,LOC107738216 coding upstream 4718 17124781 ~ 17128359 (+)
fam163aa si:dkey-193b15.8,LOC107591327,LOC107684409,LOC107738190,LOC107706402,LOC107557375,LOC107659374 coding upstream 10013 17109566 ~ 17123064 (+)
nrd1a nrdc,nrd1a,LOC107738192,LOC107684410,LOC107706405,LOC107659423,LOC105906141 coding upstream 27110 17094184 ~ 17105967 (+)
pdcd10b LOC107684411,LOC107557361,LOC105906142,LOC107706406,LOC108411198,LOC100709687 coding upstream 88304 17040002 ~ 17044773 (+)
ptx3b LOC107591444,LOC107738195,LOC107684438,LOC107659376,LOC107559106 coding upstream 103275 17025183 ~ 17029802 (+)
gadd45bb gadd45bb,LOC107738256,LOC107591447,LOC107706329,LOC107559165,LOC107659370,LOC107684432,LOC105906135 coding downstream 10485 17145373 ~ 17147065 (+)
slc1a8b slc1a8b,LOC107591333,LOC107706395,LOC107557414,LOC107738183,LOC107659353,LOC108444332,LOC105889468 coding downstream 76988 17211876 ~ 17219198 (+)
pex19 pex19,LOC107591335,LOC107684402,LOC107659417,LOC107557446,LOC107738253 coding downstream 94992 17229880 ~ 17233863 (+)
copa copa,LOC107591337,LOC107684398,LOC107706393,LOC107659416,LOC107557408 coding downstream 99170 17234058 ~ 17244433 (+)
apoda.2 apoda.2,LOC107557457,LOC107706325,LOC107591449,LOC107684429,LOC107738179 coding downstream 113047 17247935 ~ 17249242 (+)
G12818 NA non-coding upstream 9710 17123139 ~ 17123367 (+)
G12782 NA non-coding upstream 154321 16950834 ~ 16978756 (+)
G12784 NA non-coding upstream 165975 16958408 ~ 16967102 (+)
G12776 NA non-coding upstream 175818 16936932 ~ 16957259 (+)
G12781 NA non-coding upstream 177200 16946874 ~ 16955877 (+)
G12972 NA non-coding downstream 26288 17161176 ~ 17162972 (+)
G12975 NA non-coding downstream 47296 17182184 ~ 17270444 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding downstream 52229 17187117 ~ 17190607 (+)
G12985 NA non-coding downstream 69526 17204414 ~ 17206481 (+)
G12977 LOC107706390 non-coding downstream 137766 17272654 ~ 17273162 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 93174 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 356726 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 676545 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 864280 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1257313 15860179 ~ 15875764 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 227357 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 431953 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 472364 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 644451 17779339 ~ 17782364 (+)
G13137 NA other downstream 649291 17784179 ~ 17816764 (+)

Expression


Co-expression Network