G12977 (LOC107706390)


Basic Information

Item Value
gene id G12977
gene name LOC107706390
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17272654 ~ 17273162 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU19164
TTCCCTGAATGTGCACAGCTGATTACGAATGGCGGAAAAGGAGTCATCCCTCAAAAGAGAGCCATCGTCTACAACTTTCTTCTCCACGTAAACcatcagatgtttctcctgatgGTGGAAATAATTGTCTTACCTCCAAGAGGAACCTGCAAAGCTCTTTGAATGGCTCCAGAAGGGTCTCATCTCGAATCTTTTTGATGACCAGGACATTGAGCGGAGGTTTGCTCCAGGTAAGCCGCTGGCTGGCTGGGTCCTGAATGTGCCTGCGGGGAAAGTCGACAGAGTAGGCAAACATGGTATGTGTCAGCACTGCACTCCAAGCAAAGCAAAACGGCATGTACTTTGTCCTATTTCTACACTGGTTACGCAACTT

Function

NR:

description
PREDICTED: NAD kinase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19164 True 373 lncRNA 0.38 2 17272654 17273162

Neighbor

gene id symbol gene type direction distance location
sec62 sec62,LOC107684396,LOC107738178,LOC107706392,LOC107659352 coding upstream 4575 17260811 ~ 17268079 (+)
samd7 samd7,LOC107591340,LOC107557490 coding upstream 12906 17253232 ~ 17259748 (+)
apoda.2 apoda.2,LOC107557457,LOC107706325,LOC107591449,LOC107684429,LOC107738179 coding upstream 23412 17247935 ~ 17249242 (+)
copa copa,LOC107591337,LOC107684398,LOC107706393,LOC107659416,LOC107557408 coding upstream 28221 17234058 ~ 17244433 (+)
pex19 pex19,LOC107591335,LOC107684402,LOC107659417,LOC107557446,LOC107738253 coding upstream 38791 17229880 ~ 17233863 (+)
gpr160 LOC107738252,LOC107684395,LOC107591343,LOC107706324 coding downstream 3688 17276850 ~ 17280393 (+)
phc3 LOC107738171,LOC107591347,LOC107557539,LOC107706383 coding downstream 60534 17333696 ~ 17343059 (+)
myadmb si:dkeyp-66d1.7,LOC107706376,LOC107668989,LOC107591450,LOC107738251,LOC107659403,LOC107557715,LOC103040076 coding downstream 200376 17473538 ~ 17478940 (+)
ftr66 ftr66,LOC107668987,LOC107591451,LOC107706375,LOC107659402,LOC107557692 coding downstream 207542 17480704 ~ 17485854 (+)
ltb4r2b LOC107668991,LOC107738160,LOC107706371,LOC107659397 coding downstream 228181 17501343 ~ 17506122 (+)
G12975 NA non-coding upstream 2210 17182184 ~ 17270444 (+)
G12985 NA non-coding upstream 66173 17204414 ~ 17206481 (+)
G12982 diras1b,LOC107659419,LOC107591332,LOC107557388,LOC107684404,LOC107738254,LOC108236225,LOC103373792 non-coding upstream 82047 17187117 ~ 17190607 (+)
G12972 NA non-coding upstream 109682 17161176 ~ 17162972 (+)
G12823 map1sb,LOC107738188,LOC107659421,LOC107591330,LOC107684407,LOC107706295 non-coding upstream 137766 17133077 ~ 17134888 (+)
G12995 NA non-coding downstream 8098 17281260 ~ 17285830 (+)
G13007 insra,LOC107591352,LOC107558844,LOC107706379,LOC107738166,LOC107668948 non-coding downstream 112900 17386062 ~ 17387548 (+)
G13075 NA non-coding downstream 206562 17479724 ~ 17480102 (+)
G13076 NA non-coding downstream 207061 17480223 ~ 17480494 (+)
G13049 LOC107738153,LOC107668935,LOC107591359 non-coding downstream 254015 17527177 ~ 17529390 (+)
golim4b golim4b,LOC107591324,LOC107684437,LOC107706331,LOC107559125,LOC107659375,LOC107738257 other upstream 232751 17032139 ~ 17039903 (+)
LOC122361622 NA other upstream 496303 16724614 ~ 16776351 (+)
LOC122323293 NA other upstream 816122 16450132 ~ 16456532 (+)
G12531 LOC107722077,LOC107568983 other upstream 1003857 16267043 ~ 16268797 (+)
dars2 dars2,LOC107720851,LOC107700987,LOC107558296,LOC107599907 other upstream 1396890 15860179 ~ 15875764 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other downstream 89083 17362245 ~ 17369102 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other downstream 293679 17566841 ~ 17567916 (+)
G13111 LOC107738210,LOC107591364 other downstream 334090 17607252 ~ 17608092 (+)
LOC122325453 LOC107668965 other downstream 506177 17779339 ~ 17782364 (+)
G13137 NA other downstream 511017 17784179 ~ 17816764 (+)

Expression


Co-expression Network