nedd8l (nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219)


Basic Information

Item Value
gene id nedd8l
gene name nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17870258 ~ 17871416 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU19420
TCAGCGAGTTTTTCCCCAGTAGAAGCGTTTTAGCCGGTTCATTTTCATTACGTTTGAACAACTAGTGTTCAAAATACGTGATATAGTTTCTCGTGaatgtatatgaaataaaatacagctaTCAATATGTTGATTAAAGTTAAGACACTCACAGGCAAAGAAATAGAAATTGACATCGAGCCTACAGACAAGgTGGAGAGAATCAAAGAGAGGGTGGAAGAAAAGGAGGGGATCCCTCCACAACAGCAAAGACTCATTTACAGTGGGAAACAAATGAATGATGAGAAGACTGCTGCTGACTACAAGATCCAGGGAGGATCTGTCCTGCATTTAGTTCTCGCTCTCAGAGGAGGGCAAAACCTGCACTAGCCCTGCAGTCACCCAGTATCTTTCCTCTAATCTATACTTTTAAGACTGTAAATAGTAGAAATCTGCGTTGTCATGTATGTCAAAACAGCAGAATTGCCAGGAGGATCTGGTGTGTAAAGCAAAAAGTGGACCTTTGGCTTTGCAAAAACCTGTCTAAATTATGTTAGTGTGATCACAGCTGCTTGGGACTGAACTTGCAGATGAAGATGCATTCTGAACAGCTTACATGCTGGAAGTTTGTTTCTGCCCTTTTCGTTCTGCAGTATATGACGGTATAAAATTGTGcacttaaaaacacatttacttaaGTTTTAAGGTGTAATGGCTCCCTTATAAGGGCTCATGaagaaattaatttgcattaccttgcttttttaaaaaataaattcattctcCTCATCCAG
>XM_043257870.1
TATTTCGGATACACAGGAAGTCAGCGAGTTTTTCCCCAGTAGAAGCGTTTTAGCCGGTTCATTTTCATTACGTTTGAACAACTAGTGTTCAAAATACGTGATATAGTTTCTCGTGaatgtatatgaaataaaatacagctaTCAATATGTTGATTAAAGTTAAGACACTCACAGGCAAAGAAATAGAAATTGACATCGAGCCTACAGACAAGgTGGAGAGAATCAAAGAGAGGGTGGAAGAAAAGGAGGGGATCCCTCCACAACAGCAAAGACTCATTTACAGTGGGAAACAAATGAATGATGAGAAGACTGCTGCTGACTACAAGATCCAGGGAGGATCTGTCCTGCATTTAGTTCTCGCTCTCAGAGGAGGGCAAAACCTGCACTAGCCCTGCAGTCACCCAGTATCTTTCCTCTAATCTATACTTTTAAGACTGTAAATAGTAGAAATCTGCGTTGTCATGTATGTCAAAACAGCAGAATTGCCAGGAGGATCTGGTGTGTAAAGCAAAAAGTGGACCTTTGGCTTTGCAAAAACCTGTCTAAATTATGTTAGTGTGATCACAGCTGCTTGGGACTGAACTTGCAGATGAAGATGCATTCTGAACAGCTTACATGCTGGAAGTTTGTTTCTGCCCTTTTCGTTCTGCAGTATATGACGGTATAAAATTGTGcacttaaaaacacatttacttaaGTTTTAAGGTGTAATGGCTCCCTTATAAGGGCTCATGaagaaattaatttgcattaccttgcttttttaaaaaataaattcattctcCTCA

Function

symbol description
nedd8l Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process; protein neddylation; and regulation of proteolysis. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: NEDD8

GO: NA

KEGG:

id description
K12158 NEDD8; ubiquitin-like protein Nedd8

RNA

RNA id representative length rna type GC content exon number start site end site
TU19420 False 773 lncRNA 0.44 4 17870278 17871416
XM_043257870.1 True 788 mRNA 0.39 4 17870258 17871411

Neighbor

gene id symbol gene type direction distance location
homeza LOC107694670,LOC107738129,LOC107668974,LOC107591388,LOC107706343,LOC107558007 coding upstream 9241 17855305 ~ 17861017 (+)
dhrs1 LOC107738132,LOC107591387,LOC107668933,LOC107591385,LOC107706344,LOC107738130 coding upstream 15569 17851459 ~ 17854689 (+)
LOC122358068 LOC107591385,LOC107738130,LOC107591387,LOC107738132,LOC107706344,LOC107668933 coding upstream 20989 17845904 ~ 17849269 (+)
c2h14orf119 LOC107559203,LOC107694654,LOC107591384,LOC107706349,LOC107668977,LOC107738135 coding upstream 37265 17830812 ~ 17832993 (+)
mmp14b mmp14b,LOC107738136,LOC107668983,LOC107591383,LOC107704286,LOC107557973,LOC107706348 coding upstream 63462 17795304 ~ 17806796 (+)
psmb11a LOC107738125,LOC107559243,LOC107694650,LOC107706316 coding downstream 32691 17904107 ~ 17905264 (+)
psmb5 psmb5,LOC107668975,LOC107706341,LOC107558100,LOC107694665,LOC108438927 coding downstream 34766 17906182 ~ 17916000 (+)
LOC122325273 LOC107591395,LOC107668960,LOC107694638,LOC107706285,LOC107738201 coding downstream 66071 17937487 ~ 18057581 (+)
LOC122355588 LOC107738200,LOC107668916,LOC107577025,LOC107694636,LOC107706284,LOC107591436,LOC107580188 coding downstream 200723 18072139 ~ 18077753 (+)
carmil3 carmil3,lrrc16b,LOC107668915,LOC107694635,LOC107706283 coding downstream 206630 18078046 ~ 18127616 (+)
G13101 LOC107591379,LOC107668986,LOC107704284,LOC107557939,LOC107738140,LOC103040079,LOC108438942 non-coding upstream 101521 17705996 ~ 17768737 (+)
G13121 NA non-coding upstream 170433 17699589 ~ 17699825 (+)
G13112 cbln10,LOC107738246,LOC107591369,LOC107668921 non-coding upstream 191876 17676072 ~ 17678382 (+)
LOC122357958 NA non-coding upstream 258158 17610150 ~ 17612100 (+)
G13049 LOC107738153,LOC107668935,LOC107591359 non-coding upstream 340868 17527177 ~ 17529390 (+)
G13175 LOC107694667,LOC107706287,LOC107558053 non-coding downstream 8143 17879559 ~ 17881219 (+)
LOC122324202 NA non-coding downstream 13354 17884770 ~ 17886098 (+)
G13380 NA non-coding downstream 190154 18061570 ~ 18065663 (+)
G13392 NA non-coding downstream 232835 18104251 ~ 18190789 (+)
G13391 NA non-coding downstream 296374 18167790 ~ 18168494 (+)
G13137 NA other upstream 53494 17784179 ~ 17816764 (+)
LOC122325453 LOC107668965 other upstream 87894 17779339 ~ 17782364 (+)
G13111 LOC107738210,LOC107591364 other upstream 262166 17607252 ~ 17608092 (+)
G13114 tep1,LOC107591368,LOC107706362,LOC107659385,LOC107738210,LOC107591364,LOC107738151 other upstream 302342 17566841 ~ 17567916 (+)
sppl2 sppl2,LOC107738168,LOC107706381,LOC107591351,LOC107659410,LOC107668984 other upstream 501156 17362245 ~ 17369102 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other downstream 267228 18138644 ~ 18162142 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other downstream 2544787 20416203 ~ 20429348 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other downstream 2595852 20467268 ~ 20473524 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other downstream 2610248 20481664 ~ 20485218 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other downstream 2621758 20493174 ~ 20508391 (+)

Expression


Co-expression Network