G13821


Basic Information

Item Value
gene id G13821
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20317181 ~ 20321388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20410
TCTTGGTAAAAGGggttatgttattttattagtcTTAAATTTGTATCTACAACGAAGggacaagcaaaaaaaaaataagcaacaaCTCCatgaaaaaagaaaccaaagagagagagagagagaaaaaaaaaacattattgaagCACTTTTTCCATCCTTTTTTAATAAGCAACTTTTTAATCTAAAAGAAACTTTACAATATAAAGAAACATACAAAGAACATCTTAATTTACTACACAAGACAGAAAGAGTCCCTAAGACAAGGATCCGAACTACCCTAAACATGAAATACAAAGCAAACCCAAGAGACAGACTGCTTTATACTCAATACTGCTTTTCATTTGTCAGAAAGAACAACAGTGgaggaggattttttttcttcttttccacaTCCGAAGCCCCTTCCGCACCTCGTCTCCTCGCTAATGTTACAGTATCGTACAGCGTCACAATAGAATTACAGAGATGGCCAACGACGTGAGTGGTTTACATACAGAGGACTGGCTGAGGAGAAGAGACCGCAACCTATAAAACACTATCTCAAGAGAACGGGAAGGACGCTTCCcttcattttattactttttttttttttttttttaaaccccaaGGTCTCGTAGTATTCATTGGTAGTGACTGAAATATCAAAACATGTCAATgatatcaaaatgcattttacagtatttacaaacaaacaaagtaataaaataagatagacgctgtataaatgtgtgtttctctgtgtacATCGTGTCATCAAGCTGTGGAGAACTTAAAAACAGGTGCTGTGcgattaatgtgtgtgtatgtaatcaGCAGGAGGATTTTAGCATTTAGCTCTAATATTTAGCGGTTCCTTCTGAACCCTGAAAACCATTTCACTGAGAGCCCTTTActtccaaaaacacattttgtttcaaGGGATAAGACCACCCAGAGATCACTCACACTTACGCGATTCCAAACTTGCGTGACTTTCGgtggaaaataaaagaagatacttagaagaatgctggtaatcaaACGGTTTCGGctaccattgacttccattgcaTGGTCAAAAATTACGAAGTCAACAGGGACCGAAAAATGTTGTAGTTGTCAACTAGTCTTCTGAAGaatctttaaaaagacagattGAAATCATCTTctaaaagatgttttgaaaaatgttataaaccaatgaaaatgtatgaaaatgtgtttaaattgaAGTCAGCTGAGACTGATTGAGTTTAGTTATTAACATTGTTcttccaaaatgaaaaaagtttaaCTTCCCATtgactgaataaatgaaaaaatataggGACTGTTTCGATACAAACATTATTCAAAAGTCTTCTTTAATAATATagattaaaacatattttaagaatattttgaagaattggTATCCGAACAGTTTAGCTCCAGTTATTGACATACACCCTATGGGCTAAAATCACAACTGAAATCAATAGAAATGGCTTATTTactaacattcttcaaaattattctttaaaaagataGATTAAGACATCTTtaagaataattacaaaaattccCAAGTCAATGGGAacgaaaataatttatttttttaaattcttctcTAACCAGATAAAGCAAAGCATCGTCTTTaggaatattttgaaaaatgttgttaacCAAACAGCTTTGGTTCCAACTGACTGGCCGAAAAATTCAAAGGGAACCAAAAcagtgttctttaaaatatcttcaaacCAAAATACGGCTACCGATGTTCGTCAAAATACCTTCTTCAACAAGGAGTGAAGATATTCAAGAATCTTttgaatgttggtaaccaaaaattattttgttgtataGACAAAAACTACAATGTAAGTCAATGGCAATCAAATCtctttacactgtaaaaaaaaaatttaattaaataacttgttaccccgctgcctaaatatttttttgttgagtcAACTAAAATCTTTTACTCgtcatttacattaacatttaagttgactcaacaaaaaagtttttaaggcagtggggtaacaagttatttcaaatagaaacaaCTATTGTTTTCAGAAAGTCAGTTTTGGAATGACGCAAGtgaatgacataattttcatttttggatagGAACAGAACGGAAGATGCAAAATACCAAAcataaaagacaaaatgaatATTACGAAACCCCACAAGCTGCGAGCATATTTAGTTCATGTATCCCTCATTCAGCGGTCCCCGGAAGTCCTATTACGATTCCCTCATCTCATAAGCAACTGGATGTGGCGGACATCTCAcgtttttaaagatgattagACATAATACGGAACACGTACTTAACAAAATGTGTTTGAGGAGGAGGGCTCTATTGCCACAACCGAAAAAAAACCTCTAGTTTGACGAGCGCAGAGCCAACAGGATCCTCATTTGTAATGTCGTGTGACTAGAGACACCCTGTTCAGATTCATGCAGGAGGAAAGCATGTGGGTCTCTGGGGAGGGACAGAATGATACAAATCTTCAGGAGGTATCTTAGACTGGCATATTTACATGTGTACAATATGTCCTGACGGGTCGCATGCGAGACATGTGCACGATAAATCAATCCATGAACAAAAACGACAAATAAATAAGTTGTGAATCACGGTGAGCAGACATCTGTCAAGTTTAGCACTAGTTAGTTGTATAACCGCACGTTTCCAGCTCTGGtatgacatcacttcctctcTACAGACAGACTGAGACTCCAAAACGAGTTGTTGGACGCACAGGCTGGTCTGAGGAGGTTAAAGTCGCTGCTGGTTTGGGCCTCGAGCCTCACGGCCTCAGACGTTCACTCAACAGAGACGATGAAACTACATTTCCTGTATACTAGAGACGTAGAAGAAAAGGTACGGCTACCTTTTTAATCCGCGGGAGGTAAGATTTCACAGCAAACACAATACGTAGTGCAGACTTCCTGCAAAAGTCACGACACTGTTATTGTGCATTATGGATGTGTGCTTTTTTCTGTCGAATTTGTGGTTTACATACAATGTGcccctttcaaaaaaaaaagattaaaacctAATCGGTAACCATCATtacaatgttaataaaaataaaatcaacaattgataataatacaatacatacaCAGAATAATGAAAACGTTCATTGCCAAACCCATCGTAATGAGTTTCCTCTTGCATTTACACAATAAAATGGAGGAAAAAGGTGCAGATACTTTCCACTGTAAAAACGACTGCATCCattcaagattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgatcagAAAAGTGGAGTGAGTTCATAAAGATCATAAAGTGAGCAGCCCGGTGAAGCGTGCGTCTGCTCGAAACACACACCTGCCTTCCTGTGTGTGTTCAGCCCTGTTAGTGTCCTGAACCGGAGAGGAAGTCTGGGAGGCAGGGAGAGTCAGTCAACAAGCTCTTCCTGTGGCTCTGGGACTGTTTCCTGTTGCCGGTGGCCATTTTGCACAAGCTGGGATGGGCCACTTTCATGTGAGTCCTCTGCTCGTGGGGCATCCCAGAAGGCTGTGCAGAAAAAGCCAGAGTTCCGTGGGCAGAGGGTGCCGGGGGTTGATTGACGGGGCGGTCGGAGGGGGTTTGAAAACGAAACGAAAAAGAAAAccccaaataaaacaaaacaagaagaaatcACACACTCATCGTCATGTTGGGTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20410 True 3686 lncRNA 0.37 3 20317181 20321388

Neighbor

gene id symbol gene type direction distance location
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding upstream 13407 20294585 ~ 20303774 (+)
epha4b epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263 coding upstream 571286 19644610 ~ 19745895 (+)
LOC122324221 NA coding upstream 686051 19629741 ~ 19631130 (+)
LOC122357116 NA coding upstream 691843 19622041 ~ 19625338 (+)
LOC122326186 NA coding upstream 697289 19618385 ~ 19619892 (+)
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding downstream 112081 20433469 ~ 20435422 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding downstream 198521 20519909 ~ 20529006 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding downstream 216149 20537537 ~ 20539554 (+)
LOC122355453 NA coding downstream 222438 20543826 ~ 20547503 (+)
LOC122355454 cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742 coding downstream 228555 20549943 ~ 20555995 (+)
G13829 znf622,LOC107678698,LOC107602620,LOC107588872 non-coding upstream 2200 20312046 ~ 20314981 (+)
G13768 NA non-coding upstream 701126 19613459 ~ 19616055 (+)
G13769 NA non-coding upstream 704276 19612269 ~ 19612905 (+)
G13748 NA non-coding upstream 776203 19538570 ~ 19540978 (+)
G13690 NA non-coding upstream 1153839 19163105 ~ 19163342 (+)
G13857 NA non-coding downstream 142350 20463738 ~ 20463959 (+)
G13874 NA non-coding downstream 144139 20465527 ~ 20465846 (+)
G13851 LOC107721736 non-coding downstream 156575 20477963 ~ 20499950 (+)
G13880 NA non-coding downstream 159629 20481017 ~ 20503339 (+)
G13883 NA non-coding downstream 165101 20486489 ~ 20486870 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2155039 18138644 ~ 18162142 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other upstream 2445765 17870258 ~ 17871416 (+)
G13137 NA other upstream 2500417 17784179 ~ 17816764 (+)
LOC122325453 LOC107668965 other upstream 2534817 17779339 ~ 17782364 (+)
G13111 LOC107738210,LOC107591364 other upstream 2709089 17607252 ~ 17608092 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other downstream 94815 20416203 ~ 20429348 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other downstream 145880 20467268 ~ 20473524 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other downstream 160276 20481664 ~ 20485218 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other downstream 171786 20493174 ~ 20508391 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 842554 21163942 ~ 21164822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G382345 NA misc CI01000190 null 227982 ~ 250040 (+)