G13829 (znf622,LOC107678698,LOC107602620,LOC107588872)


Basic Information

Item Value
gene id G13829
gene name znf622,LOC107678698,LOC107602620,LOC107588872
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20312046 ~ 20314981 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20420
TAGGTATGAAATAAATCCTCTCAGGTTCGCCAGATACTCAATATCTGGAAGGAAGAAGCTGTGTGTTTTGGTCATGTGCGTCATGTTTCGGGTGAGCGAGCGTGAATGATGTCCGCAGAACAGACAGTCTGTCACTGGGATGGCCCCGGGGGCTGGAGCTGCCCCAGATGTGGAGtcctcctccatctcctcctcctcctcttcatcgtcatcatcatcatcaccatccatatcctcatcctcatcaacATCCTCccattctttaaataaaaaataagattcTTAATTAGCGGTTTCAAAGCAAATCAGTCAAGTCAGAATTATTTCAGTGGAATTTTCCACAACAGACTGTTTCAAAGCAACTTCATATGACTAAACATgacaacatatacatatacatatatatatatgtagtgtaCATGTtggaaaatgcattaattataaaacTGATTGTCTGTAAAGCCGCTCAACAGAAGATAACAGTTTAGTTCAATTCAATAATTTAACACTACAATAATGTCATTATCTAGCTCAATTCAGTTCAAAGTTTGTTCTCATTTAAAACTGTCAgcacatttaaatcaatattactaatatttagtTATGACTTGAGTTCATTTTCTTATCTTAATTTTCAAccttaatttaatatatttttatatattataaatatattaatataattataaataataataataatattaatattataaataaaaatatattatatataattataaatatattaatatatattttttactgctagctatgttgtttattttttacagttttttgttagttatactgttaattatgtattttatatttactaataaCTCAGCGgcttatttaaactttattagtCACTTTTAATGTCATAACGCTTTGGCGATATTGAATGGAAACGCTATCACTTTAGAACagtaattttaaattcaaagcatgaaattaaaatcgtattttattgtaaataattcttgccctcctcctcctcctcttcttcttcttccccgTCCTCCGCAGCGATCTTCTTGGCCTGCTGCTCGAACCACTGCAGCCGAGGCGGTTTGTCCGGTCTCGTTCTGACCCGTTTCTCTGGGGGCGTAGCTTTGGTGGGGGCGTGTCTCTGCTTCTCCCTGAGCACTTTCTGAAGCGCTTCATTCTGTGCGTTTTTATCTAGCTCCGCCCCTTTCTCTAGATTCTTCTCGTTCATTCGCTGGACAGTCTCCCGGGCCACGGCCAGGGCTTTCCTCTCAGCCTGTTGGTGCTTATTGGATTGGATGTGATTGTTGTAAGCGTTTTCAGTGGAGAATTTTTTGTTGCAGGTGGCACAGTAGGCCGAGCCGTGTCCGCCGCTCTGACTCTCCTGCTCGGCTGCCACCCGCTGTGCCAGCACTCGCTCCTGGAAGTTTTCTGCGGTGACCGGAGGCATGTCTGCAACCTTTCTCTTCAGATTGTAGCGGTGCCAGTCTGTTTTATAATGCGCCCGCTGGACCTCCCCATCAGAGAACTGCACACGGCAGCTGATGCACGTGTATGACatgactgcaaaaaaatataTTCGTTTATTTGATCCTTCCTCGTGAAAGTTTACAGCCTCGCAGTACTGACAACACGAGGATGGCGAAACAACCTTTGACCCCGAACACAAGCGCGC

Function

symbol description
znf622 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in cytoplasm. Predicted to be part of preribosome, large subunit precursor. Is expressed in optic cup and optic tectum. Orthologous to human ZNF622 (zinc finger protein 622).

NR:

description
PREDICTED: zinc finger protein 622

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20420 True 1663 lncRNA 0.40 2 20312046 20314981

Neighbor

gene id symbol gene type direction distance location
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding upstream 8272 20294585 ~ 20303774 (+)
epha4b epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263 coding upstream 566151 19644610 ~ 19745895 (+)
LOC122324221 NA coding upstream 680916 19629741 ~ 19631130 (+)
LOC122357116 NA coding upstream 686708 19622041 ~ 19625338 (+)
LOC122326186 NA coding upstream 692154 19618385 ~ 19619892 (+)
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding downstream 118488 20433469 ~ 20435422 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding downstream 204928 20519909 ~ 20529006 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding downstream 222556 20537537 ~ 20539554 (+)
LOC122355453 NA coding downstream 228845 20543826 ~ 20547503 (+)
LOC122355454 cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742 coding downstream 234962 20549943 ~ 20555995 (+)
G13768 NA non-coding upstream 695991 19613459 ~ 19616055 (+)
G13769 NA non-coding upstream 699141 19612269 ~ 19612905 (+)
G13748 NA non-coding upstream 771068 19538570 ~ 19540978 (+)
G13690 NA non-coding upstream 1148704 19163105 ~ 19163342 (+)
G13682 NA non-coding upstream 1178910 19132729 ~ 19133136 (+)
G13821 NA non-coding downstream 2200 20317181 ~ 20321388 (+)
G13857 NA non-coding downstream 148757 20463738 ~ 20463959 (+)
G13874 NA non-coding downstream 150546 20465527 ~ 20465846 (+)
G13851 LOC107721736 non-coding downstream 162982 20477963 ~ 20499950 (+)
G13880 NA non-coding downstream 166036 20481017 ~ 20503339 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2149904 18138644 ~ 18162142 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other upstream 2440630 17870258 ~ 17871416 (+)
G13137 NA other upstream 2495282 17784179 ~ 17816764 (+)
LOC122325453 LOC107668965 other upstream 2529682 17779339 ~ 17782364 (+)
G13111 LOC107738210,LOC107591364 other upstream 2703954 17607252 ~ 17608092 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other downstream 101222 20416203 ~ 20429348 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other downstream 152287 20467268 ~ 20473524 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other downstream 166683 20481664 ~ 20485218 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other downstream 178193 20493174 ~ 20508391 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 848961 21163942 ~ 21164822 (+)

Expression


Co-expression Network