G13880


Basic Information

Item Value
gene id G13880
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20481017 ~ 20503339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20474
TTAACTCAACTTAATGGGTTTTAATTCAAGTTCAGGGTAAAGATGGTCACGAGTCTCACTCTTCCTCCACGCGACACTTCTCTCGCGCGCTGAACGGTACCTCAGGTCTTATTTATAGATTATACGGTTGCCTCCTAGTATCCGCCCACTAATTTGACGCTAAACGCGGATATTTGGGGAATCGCTTTACGCGCTGACCGGACCGAACCTGctgtttcacttttattttcactttcgTGTCTGCATTCCTCTTTCGCCGGTCATGCGAGTTTTTCCATCGTTTGTCTGGGTTGTTCGTGACTTCACTCTGGAACTGAAACTAGAAAACGAGCCAATAACATCAGACGAGTATCTAGAGAGTGCACTGACACT
>TU20475
CAGACTGGTGTCCTGCCAGGCGGTTCATAAGGTAAGACTTCCCCGTACGATAGAGTCCCACCACAGACACCACCACCACCGGCTCATTGATCTGACTCAGGAACTCAATGGCAGGCTTACAGACACCAAGTGATCCGTTCACATTCTCCACCAAACATATGGGCGAAGGCATTAGTCCAGCTTTAGACATGCTTGCTCTCTAGCTCTTCCTTATGTGTCTTGATTCAAGTTCAGGGTAAAGATGGTCACGAGTCTCACTCTTCCTCCACGCGACACCTCTCTCGCGCGCTGAACGGTACCTCAGGTCTTATTTATAGATTATACGGTTGCCTCCTAGTATCCGCCCACTAATTTGACGCTAAACGCGGATATTTGGGGAATCGCTTTACGCGCTGACCGGACCGAACCTGctgtttcacttttattttcactttcgTGTCTGCATTCCTCTTTCGCCGGTCATGCGAGTTTTTCCATCGTTTGTCTGGGTTGTTCGTGACTTCACTCTGGAACTGAAACTAGAAAACGAGCCAATAACATCAGACGAGTATCTAGAGAGTGCACTGACACT
>TU20476
GTAAACGCAgaataatggcttttttttgtttgtttgtttgtttcaaaatgttGCAGGTTATGGGAGCGGCCAGGCCTGACACAGCAAACGTCCTACCATTTGACTGCTTTCAGAGCCCGTGAATATAAAAGTAACCACAGTCCTTCAGATATAGTCAGCTTGTAATTCAAAAGTTTACTAATCGgattgtaaacaaaacattggCACAACGGAATTTTTAAATAGATGTCCTCATTTGAATAAACGTCAAAGAAattgtcaaaacaaaaacaaaacaaagttcACTTACTTAACTCAACTTATGTGTCTTGATTCAAGTTCAGGGTAAAGATGGTCACGAGTCTCACTCTTCCTCCACGCGACACTTCTCTCGCGCGCTGAACGGTACCTCAGGTCTTATTTATAGATTATACGGTTGCCTCCTAGTATCCGCCCACTAATTTGACGCTAAACGCGGATATTTGGGGAATCGCTTTACGCGCTGACCGGACCGAACCTGctgtttcacttttattttcactttcgTGTCTGCATTCCTCTTTCGCCGGTCATGCGAGTTTTTCCATCGTTTGTCTGGGTTGTTCGTGACTTCACTCTGGAACTGAAACTAGAAAACGAGCCAATAACATCAGACGAGTATCTAGAGAGTGCACTGACACT

Function

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0045137 development of primary sexual characteristics biological_process
GO:0007548 sex differentiation biological_process
GO:0061458 reproductive system development biological_process
GO:0048608 reproductive structure development biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004857 enzyme inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20474 False 372 lncRNA 0.46 2 20492928 20503339
TU20475 False 571 lncRNA 0.49 2 20501795 20503339
TU20476 True 660 lncRNA 0.38 3 20481017 20503339

Neighbor

gene id symbol gene type direction distance location
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding upstream 45595 20433469 ~ 20435422 (+)
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding upstream 177243 20294585 ~ 20303774 (+)
epha4b epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263 coding upstream 735122 19644610 ~ 19745895 (+)
LOC122324221 NA coding upstream 849887 19629741 ~ 19631130 (+)
LOC122357116 NA coding upstream 855679 19622041 ~ 19625338 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding downstream 16570 20519909 ~ 20529006 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding downstream 34198 20537537 ~ 20539554 (+)
LOC122355453 NA coding downstream 40487 20543826 ~ 20547503 (+)
LOC122355454 cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742 coding downstream 46604 20549943 ~ 20555995 (+)
tmeff1a LOC107749138,LOC107602613,LOC107659611 coding downstream 59575 20562914 ~ 20567961 (+)
G13874 NA non-coding upstream 15171 20465527 ~ 20465846 (+)
G13857 NA non-coding upstream 17058 20463738 ~ 20463959 (+)
G13821 NA non-coding upstream 159629 20317181 ~ 20321388 (+)
G13829 znf622,LOC107678698,LOC107602620,LOC107588872 non-coding upstream 166036 20312046 ~ 20314981 (+)
G13768 NA non-coding upstream 864962 19613459 ~ 19616055 (+)
G13896 NA non-coding downstream 28873 20532212 ~ 20532738 (+)
G13863 NA non-coding downstream 88379 20591718 ~ 20595093 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding downstream 112819 20616158 ~ 20617660 (+)
G13964 NA non-coding downstream 396225 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 452596 20955935 ~ 20957136 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 7493 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 51669 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2318875 18138644 ~ 18162142 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other upstream 2609601 17870258 ~ 17871416 (+)
G13137 NA other upstream 2664253 17784179 ~ 17816764 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 660603 21163942 ~ 21164822 (+)
G14211 NA other downstream 804068 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 977795 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 1029906 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 1211344 21714683 ~ 21716290 (+)

Expression


Co-expression Network