LOC122326305 (LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697)


Basic Information

Item Value
gene id LOC122326305
gene name LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20493174 ~ 20508391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20478
CTCGCAGCTGCCTGCGACATTTCTTTGCGGTGAGGAAGTGCTTTGTTTTCACCCGGCCTGCTAGTACGCAAAACATGAGAAGAATGGAGGAGCTGACTGGGAATGATCTAGATTCAGAGTTCCTTGAGCAGGAAAACACCTTCTGCCATTACATTTTTGACAGTGCAGATCCAAAAACAGTCAGCGGAAGCCGTGTAATTACTGGGACAGCTTTGGGTAATCTCGCCGAGGTTTACATTGAGGCGATCCGCAGCGGGAAGATTCCTTGTTTGGAGAATGCAGTGGTGTCTCTGGCTAAGATCCAGAACGTCCGTGCAGTGGA
>XM_043221087.1
TCCTCTTTCGCCGGTCATGCGAGTTTTTCCATCGTTTGTCTGGGTTGTTCGTGACTTCACTCTGGAACTGAAACTAGAAAACGAGCCAATAACATCAGACGAGTATCTAGAGAGTGCACTGACACTGAAATCAGGTAGCTCACGTCAAACTGAGCAGTATAACCTGCCTCGCAGCTGCCTGCGACATTTCTTTGCGGTGAGGAAGTGCTTTGTTTTCACCCGGCCTGCTAGTACGCAAAACATGAGAAGAATGGAGGAGCTGACTGGGAATGATCTAGATTCAGAGTTCCTTGAGCAGGAAAACACCTTCTGCCATTACATTTTTGACAGTGCAGATCCAAAAACAGTCAGCGGAAGCCGTGTAATTACTGGGACAGCTTTGGGTAATCTCGCCGAGGTTTACATTGAGGCGATCCGCAGCGGGAAGATTCCTTGTTTGGAGAATGCAGTGGTGTCTCTGGCTAAGATCCAGAACGTCCATGCGGTGGACGAGGCCCTGCAGTTTTACATGACTGAGATGTTCAGCATGGCTCAGCTTCCTCTGCGCCCAGAAGAGCTGTCCGACATCCACACAGATGCAGAGAAGGCGGCCATTGAAGTATTCATCACCATGTCCTTCAATGACAATGAACAGATCTACCAAAAAGGGCTCATGGAGAAACTGAATGATGAATATCAGCAAATATGCCGGCAAAATCAGGAAGAATCTATCAAGCAGTGTAAAGCTGTTCTGCTTGAGGTGTTTGATACACTCGAGAAATGTGTTTCTGATGGATTGTACCTGAGACCTGGAGGATACCAacagtacagacacacactcagataTCTGACCAGTGACTACAGAGAAAGAACACACTCACAAATAATGACCTTTTTCCTACAGAATGAACAAGTGTTGAGcaagtttttgaaagaaaaggaAGATATTGGAAATATTATTCTACAAGCTGACCAATCTCTCAGTGAAGCGGAACAGGAAAAAGAGGTGCAGAGCTTGAAGAATGAGATTCTATCGCAGCGACAAAGAGGTCTAGAGGAACAGAACCGGCTAAAGGAGCAGGCTTATAAAGACATGCAGAGATCCCATAAAGAACATGTGGATCAGATCATTTGTCAGATGGAAAGAGAGCAGGAGAGAATGAGGAGAGACAATGAACGAGTCCTGGAAGCCAAGCTAAGAGAAAAAGATGCTCTTCTAGAGAAGGGTTTACAGGAGCAAGCCTTATAGATGCAGAGGCAGATTGACGGTCTAAGAtcagaaatgcatgaaaaaaagaaatcaaaacgaTCTACACTCAGCCGGATTGCAGATGGTCTCAGTGCTACAGCAGAACTGATCTTGCCGGGCTTTGTCA
>XM_043221096.1
TCCTCTTTCGCCGGTCATGCGAGTTTTTCCATCGTTTGTCTGGGTTGTTCGTGACTTCACTCTGGAACTGAAACTAGAAAACGAGCCAATAACATCAGACGAGTATCTAGAGAGTGCACTGACACTGAAATCAGGTAGCTCACGTCAAACTGAGCAGTATAACCTGCCTCGCAGCTGCCTGCGACATTTCTTTGCGGTGAGGAAGTGCTTTGTTTTCACCCGGCCTGCTAGTACGCAAAACATGAGAAGAATGGAGGAGCTGACTGGGAATGATCTAGATTCAGAGTTCCTTGAGCAGGAAAACACCTTCTGCCATTACATTTTTGACAGTGCAGATCCAAAAACAGTCAGCGGAAGCCGTGTAATTACTGGGACAGCTTTGGGTAATCTCGCCGAGGTTTACATTGAGGCGATCCGCAGCGGGAAGATTCCTTGTTTGGAGAATGCAGTGGTGTCTCTGGCTAAGATCCAGAACGTCCATGCGGTGGACGAGGCCCTGCAGTTTTACATGACTGAGATGTTCAGCATGGCTCAGCTTCCTCTGCGCCCAGAAGAGCTGTCCGACATCCACACAGATGCAGAGAAGGCGGCCATTGAAGTATTCATCACCATGTCCTTCAATGACAATGAACAGATCTACCAAAAAGGGCTCATGGAGAAACTGAATGATGAATATCAGCAAATATGCCGGCAAAATCAGGAAGAATCTATCAAGCAGTGTAAAGCTGTTCTGCTTGAGGTGTTTGATACACTCGAGAAATGTGTTTCTGATGGATTGTACCTGAGACCTGGAGGATACCAacagtacagacacacactcagataTCTGACCAGTGACTACAGAGAAAGAACACACTCACAAATAATGAATGAAGAAGTGTTGAGcaagtttttgaaagaaaaggaAGATATTGGAAATTTTATTCTACAAGCTGACCAATCTCTTAGTGAAGCGGAACAGGAAAAAGAGGTGCAGAGCTTGAAGAATGAGATTCTAGCGCAACGACAAAGAGGTCTAGAGGAACAGAACCGGCTACAGGAGCAGGCTTATAAAGACATGCGGAGATCCCATAAAGAACATGTGGATCAGATCATTTGTCAGATGGAAAGAGCAGGAGAGAATGAGGAGAGACAATGAACGAGTCCTGGAAGTCAAGCTAAGAGTAAGAACAGGACACTTTAAAATCATAGACTTTGCTTGTTCCAGAGAAGTCACCTTCAAAAAAGTCCTGGTTAGCAATTTTTTTCACTTGTGGCTGTTTGTGTTGCACTGCAGGAGAAAGATGCTCTTCTAGAGAAGGGTTTGCAGGAGCAAGCCTTATAGATGCAGAGGCAGGTCTCAGTGCTACAGCAGAACTGATCTTGGGCTTTGTCATGAAATGGTTCAAATAAGAGTGGTTGCATTggattctgatttaaaaaagtgcaaaagTCATGTAGTAGATGTGTggaatttgtcatttaaatgtttaaattctgaaagtttttaaaaacctttatcaTTATAGTTATCATCCTTGGTGTAAACGGGCCGTAAGCCTCCAAGCAATGAGTTTTATGGTGCTTTCACTGTGTGTTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20478 False 322 TUCP 0.50 3 20493442 20504223
XM_043221087.1 False 1355 mRNA 0.45 7 20493174 20495541
XM_043221096.1 True 1582 mRNA 0.44 6 20493174 20508391

Neighbor

gene id symbol gene type direction distance location
odf3l2a zgc:110183,LOC107749223,LOC107602632,LOC107721708,LOC107588920,LOC107690329,LOC107678684 coding upstream 57752 20433469 ~ 20435422 (+)
acvr1l acvr1l,LOC107678695,LOC107749086,LOC107602619,LOC107721710,LOC107690001 coding upstream 189400 20294585 ~ 20303774 (+)
epha4b epha4b,LOC107694655,LOC107668971,LOC108428906,LOC108268054,LOC103372263 coding upstream 747279 19644610 ~ 19745895 (+)
LOC122324221 NA coding upstream 862044 19629741 ~ 19631130 (+)
LOC122357116 NA coding upstream 867836 19622041 ~ 19625338 (+)
vcpip1 vcpip1,LOC107567007,LOC107721719,LOC107659314,LOC107690121,LOC107749097,LOC107602633 coding downstream 11518 20519909 ~ 20529006 (+)
LOC122358486 LOC107602635,LOC107566996,LOC107721759 coding downstream 29146 20537537 ~ 20539554 (+)
LOC122355453 NA coding downstream 35435 20543826 ~ 20547503 (+)
LOC122355454 cyp7b1,LOC107749124,LOC107659553,LOC107602637,LOC107566988,LOC107690180,LOC107721742 coding downstream 41552 20549943 ~ 20555995 (+)
tmeff1a LOC107749138,LOC107602613,LOC107659611 coding downstream 54523 20562914 ~ 20567961 (+)
G13884 NA non-coding upstream 2261 20490111 ~ 20490913 (+)
G13883 NA non-coding upstream 6304 20486489 ~ 20486870 (+)
G13874 NA non-coding upstream 27328 20465527 ~ 20465846 (+)
G13857 NA non-coding upstream 29215 20463738 ~ 20463959 (+)
G13821 NA non-coding upstream 171786 20317181 ~ 20321388 (+)
G13896 NA non-coding downstream 23821 20532212 ~ 20532738 (+)
G13863 NA non-coding downstream 83327 20591718 ~ 20595093 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding downstream 107767 20616158 ~ 20617660 (+)
G13964 NA non-coding downstream 391173 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 447544 20955935 ~ 20957136 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 7956 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 19650 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 63826 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2331032 18138644 ~ 18162142 (+)
nedd8l nedd8l,LOC107591390,LOC104949953,LOC104931181,LOC107559219 other upstream 2621758 17870258 ~ 17871416 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 655551 21163942 ~ 21164822 (+)
G14211 NA other downstream 799016 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 972743 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 1024854 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 1206292 21714683 ~ 21716290 (+)

Expression


Co-expression Network