G13909 (gtpbp4,LOC107690210,LOC107721733,LOC107567003)


Basic Information

Item Value
gene id G13909
gene name gtpbp4,LOC107690210,LOC107721733,LOC107567003
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20616158 ~ 20617660 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20511
CTTGTTCTAAATACTCCAGACTCTGTTTCTGTCGCTTTAAAATGGTGCACATGCGCCCCAGTGCGGCCCGTTTGAGCTGCTTGCAGCGATACAGCGAGTCTCCATATTTCATCAGTCGCACATAATCTTTTGCAACACTATAAATGCACAGACACAAAGTATCACTCAATTAAAAAACTGCAAATACccacagatgagacaaaaaaataatgtgcatgaaagaaaaattcaACAGACTCACTTGTCAATGAGGTTCTTGGCGATGTTGATCTGACCCAAAGCCAGTTTATAATGATCTTTATCATACAGCACATTCATCAGATCAGCATAGAAAGGGTGAATAtcctgaaacaaacacaaagttaGTCCTTTATCTGCTACACGATGGATGACTAGGAAGATTTATCATATATGACCTTTATCCCATGCATATAATTTGTGTGACACTTACGTCCAGTTTGGGAAAGTCGGTGAGGATCTGTGACAGTCGATCATGGTAGTTCTGCTGGGTGAATTTGACTTTGCGCATATAGAAATGTCTAATTCGGTGGATCTGATAGTGTTTGTGTATTACAGTGGGAGTTTTCCGCTGGGTTTTGGATAAAGTCAGATCGATGAAATCCTCGGTGGGAACCACCATAATCTTTTTAAAGTTGTACAGAGCCATGATCGCAGCACACGCGACTCTCTACAGAGCACGCGGAAGGGCCGACACACGCAGCGGACGCGTGCCACGAAGAGCAACACACGTGATGCAGCGCTGAC

Function

symbol description
gtpbp4 Predicted to enable GTP binding activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Is expressed in gill. Orthologous to human GTPBP4 (GTP binding protein 4).

NR:

description
PREDICTED: nucleolar GTP-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20511 True 765 lncRNA 0.37 2 20616158 20617660

Neighbor

gene id symbol gene type direction distance location
LOC122360253 NA coding upstream 10225 20596332 ~ 20605933 (+)
tmem71 tmem71,si:ch211-235o23.1,LOC107690185,LOC107749144,LOC107659711,LOC107566994 coding upstream 27583 20578426 ~ 20588575 (+)
ift57 ift57,LOC107659588,LOC107602615,LOC107566989,LOC107690362 coding upstream 38509 20572747 ~ 20577649 (+)
cavin4a murca,LOC107749140,LOC107602614,LOC107659646,LOC107690354,LOC107721748,LOC108428327 coding upstream 44237 20568457 ~ 20571921 (+)
tmeff1a LOC107749138,LOC107602613,LOC107659611 coding upstream 48197 20562914 ~ 20567961 (+)
march11 march11,LOC107659635,LOC107602618,LOC107749139,LOC107663337,LOC107721766 coding downstream 89304 20706964 ~ 20712152 (+)
LOC122357870 NA coding downstream 133176 20750836 ~ 20753976 (+)
LOC122357878 NA coding downstream 145871 20763531 ~ 20768201 (+)
LOC122357891 LOC107749191,LOC107749120 coding downstream 151384 20769044 ~ 20771030 (+)
LOC122357864 NA coding downstream 154876 20772536 ~ 20778053 (+)
G13863 NA non-coding upstream 21065 20591718 ~ 20595093 (+)
G13896 NA non-coding upstream 83420 20532212 ~ 20532738 (+)
G13880 NA non-coding upstream 112819 20481017 ~ 20503339 (+)
G13851 LOC107721736 non-coding upstream 116208 20477963 ~ 20499950 (+)
G13964 NA non-coding downstream 281904 20899564 ~ 20946266 (+)
G13980 NA non-coding downstream 338275 20955935 ~ 20957136 (+)
G13976 NA non-coding downstream 344033 20961693 ~ 20966228 (+)
G13992 NA non-coding downstream 530520 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 531561 21149221 ~ 21150007 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 107767 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 130940 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 142634 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 186810 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2454016 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 546282 21163942 ~ 21164822 (+)
G14211 NA other downstream 689747 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 863474 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 915585 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 1097023 21714683 ~ 21716290 (+)

Expression


Co-expression Network