G13964


Basic Information

Item Value
gene id G13964
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20899564 ~ 20946266 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20595
tgtgtgtgtgtgtgtgtgtgtgtgcgcgatagagaaCACACTGAAAGTGAAAGTTGTGTAGCAGTGAAATATTCAGCAAGCTTTAATGAGACTGACAATTACTCATCTGCTTAACTATACGTCTAATGAAGAGAACTAAATATATCTCACATTAtttcatcaaacacacacacgcttccaCGAGCTCAGTAGAGAGTGTGATTATGCTTATTCTCTCTTGCTGTGTCATATCATAgcatattctctctctctctctctctctctctctctgtctcgctcACATAAGTGGAGGCACTTCTGGATCGTCCACGAAGTCCTTTGACACAGGCCTCTCTTCGACGCCACAGCGATGGGGAGGCTGCGAGAGCTGCAGGGGCTTGTGGGAAGACTCTTTTCCTTTGGGAACAATGTTGGCCAGACTCCCAGCCAGACCGGGATCCACCTCTAATAATTCACGCCCTGGCG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU20595 True 465 lncRNA 0.33 2 20899564 20946266

Neighbor

gene id symbol gene type direction distance location
efr3a efr3a,LOC107721726,LOC107749108,LOC107663339 coding upstream 12020 20854977 ~ 20887544 (+)
basp1 basp1 coding upstream 107706 20778714 ~ 20791858 (+)
LOC122357864 NA coding upstream 121511 20772536 ~ 20778053 (+)
LOC122357891 LOC107749191,LOC107749120 coding upstream 128534 20769044 ~ 20771030 (+)
LOC122357878 NA coding upstream 131363 20763531 ~ 20768201 (+)
pard3ab pard3,LOC107690576,LOC107659281,LOC107557790 coding downstream 29273 20975539 ~ 21044413 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding downstream 126819 21073085 ~ 21095565 (+)
LOC122359068 itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578 coding downstream 153419 21099685 ~ 21115999 (+)
itgb1b.2 LOC107749109,LOC107563812 coding downstream 170203 21116469 ~ 21122754 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding downstream 176773 21123039 ~ 21130329 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding upstream 281904 20616158 ~ 20617660 (+)
G13863 NA non-coding upstream 304471 20591718 ~ 20595093 (+)
G13896 NA non-coding upstream 366826 20532212 ~ 20532738 (+)
G13880 NA non-coding upstream 396225 20481017 ~ 20503339 (+)
G13980 NA non-coding downstream 9669 20955935 ~ 20957136 (+)
G13976 NA non-coding downstream 15427 20961693 ~ 20966228 (+)
G13992 NA non-coding downstream 201914 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 202955 21149221 ~ 21150007 (+)
G13994 NA non-coding downstream 204392 21150658 ~ 21151136 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 391173 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 414346 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 426040 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 470216 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2737422 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 217676 21163942 ~ 21164822 (+)
G14211 NA other downstream 361141 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 534868 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 586979 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 768417 21714683 ~ 21716290 (+)

Expression


Co-expression Network