G13976


Basic Information

Item Value
gene id G13976
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 20961693 ~ 20966228 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20610
GGAAGATcgtatacatttacaaaaatattttattaaaaataaatgtcagcgTTCTGTACAGTGTTAAAGAAGAACAGGGCATACAATCTAATTGAGAGATTAACTGAAAACATaagctatttaaatattaaatcaacaAATCCATTTTCTTGCCCAGACTTCATAGAATAGTACATCATAGAGACACAGAAATGAGTCTGAGAAAACAGaagataaatacacacacacacacacacacacactggcatcCTAACAGCAGAAATATGAGGAATTCTGTTCAGTTAATGCCACTTTTCTGATTTAGAGAATCTGCATTCTTATTACTTACAAAAGCCTCTTTTCTTTCACAGGTCTCTTTTACAttcataaacaataaaatacaaatgactgcgatttaaaatatacaatattgcATGAAAAGCAACATTTGTGACATCTACTTAAGTATCATGTTGACAATTCATAATGTtacaccttttttcttttttcatgcaAAACCCATGTACTTATCCTCACGTTATATGGAGCACAAACGGATGCAGCATTAAAGCTAAAGAGTAATTTCCCAGCTTCTAGCTTTGCGAAAAggatttgatcaaaattaataaacatgttCAAACGGGTTTCCAAAACACTCCCCGCACCTTTCATTAACAGATAGATCCGCCTCAAAATCACTCCATCGGTTGTGCCAATGTCGCTGCTTGGGtgcaaacaaacagagaaatcAACCtgcaaatgattcatttatagTTTGTCTCTGAATATAGAGATGGTatagtaaaacatattttttaccAAGACATGAAACAATTGACAGAGTTGTGCTTATGCtacaaactgaataaaagagTGCTATATAAAAAACCTGTAGTTAGGAGCAgtcttaaagagatagtttatccataaaattaacattcagattatttacttaccctcacgtaattctaaacctgtatgactttctcttgcagaaaccaaaagaaggtattttgaagaactgGTTTGGTCTACACAATGTAAGTACGCAAACTGTacgtttttgagtgaactatccgtTTAAACACTTATGTCAACATTATGTAATCACCAACATTATGTCACGTTTCTTGGTGAAATTTTAGGTCACTGTTACATTCAGCCATGAGCTTAAATGACTAATCAACAACTCCAAACAGCTCAATCTAGTGTACATAATTAaacttagatttaaaaaatgagtGGAAAGTGCTTTAACAATTTTGCATTTAACGCTGCACACATAAACAGGATCAGCTAAAGCTGAGACTATAAATATATTGATTTCCGATGTACTACATtaagtctttttcttttttaagaacCACAAATTGCAAAATTCATATCGGAACGTACAAACTTGTTTGAAATCTTACATGaagaaaattactttttattaacttaaaaattgaaatgcaaaatgtagTCAATCAGGTTTACTGAATAGATTGTGGCTGCtattaatgcaacattttatgttGCTTCGGATGGAAttacagtttattttctttatatttacagCTGAATTCTGTGCATaccaaaaatgctgtttatgtgTGCAGTGTGTAGCCGTTTCCTTAGCTTGTTctgatttaaatctaaaaaagaaaacatatttttccaCACAAATCAATTAAGAgttccagttttttttaaatacagagaacaGCAATAGTATACACCCAtcttaaaatgtatgtgtgtgtgtgtgtgtatgtgtgtgtgaggagcaTCCTCAAAGCAACATTAGCGACTtcttataaaaaacatttggccaaacaattgaacaaaaaaaaaaaaaagctaaaatccAGGCGATGCaacagaagaagagaagagacagGTAGTGTGTGAATCACACAGTCCttgagcagtgtttgtgaggGTTATTCTGGTTTGTGGCAGTAGATGTCTTTAAGAGCTTTGAGCTCCTCTATGAGAGTCTTGTTCTGGTTTTCCAGCACAGCGACGCGATTCTCCAAGCACTTGACGTATTCTTTCTTCTTCCTGCGACATTCGCGCGCTGCCTCCCTGCAACCTGTTCTTCATCAGGCGGACTTCTCTCTTGCGTGTGGCCTCCTCTGCGTTCTGCTGTGGGCTGTGCATGGCCCCGGGTGATGCTGCCATAACAACGCCTGGTGGTAACCCTGATGACGGGGAGCGGATCTGATACGCTGGCATGTCTCCTGTGGTAATCCAGTTGTGATTGTGTTTTGAGTGCTATCTTCTGTTTCCTATGtatttcctctctttctttcagctGCTTCACTGAACGATTTTCCTCCTCATACACTCTTTCTGACTATCTTAGTTCGAGTTGTGACACTTTGTGTTTTGCCTTTAACCCtccctctcgttctctctctctctct

Function

GO:

id name namespace
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20610 True 2390 lncRNA 0.35 3 20961693 20966228

Neighbor

gene id symbol gene type direction distance location
efr3a efr3a,LOC107721726,LOC107749108,LOC107663339 coding upstream 74149 20854977 ~ 20887544 (+)
basp1 basp1 coding upstream 169835 20778714 ~ 20791858 (+)
LOC122357864 NA coding upstream 183640 20772536 ~ 20778053 (+)
LOC122357891 LOC107749191,LOC107749120 coding upstream 190663 20769044 ~ 20771030 (+)
LOC122357878 NA coding upstream 193492 20763531 ~ 20768201 (+)
pard3ab pard3,LOC107690576,LOC107659281,LOC107557790 coding downstream 9311 20975539 ~ 21044413 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding downstream 106857 21073085 ~ 21095565 (+)
LOC122359068 itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578 coding downstream 133457 21099685 ~ 21115999 (+)
itgb1b.2 LOC107749109,LOC107563812 coding downstream 150241 21116469 ~ 21122754 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding downstream 156811 21123039 ~ 21130329 (+)
G13980 NA non-coding upstream 4557 20955935 ~ 20957136 (+)
G13964 NA non-coding upstream 15427 20899564 ~ 20946266 (+)
G13909 gtpbp4,LOC107690210,LOC107721733,LOC107567003 non-coding upstream 344033 20616158 ~ 20617660 (+)
G13863 NA non-coding upstream 366600 20591718 ~ 20595093 (+)
G13896 NA non-coding upstream 428955 20532212 ~ 20532738 (+)
G13992 NA non-coding downstream 181952 21148180 ~ 21148512 (+)
G13993 NA non-coding downstream 182993 21149221 ~ 21150007 (+)
G13994 NA non-coding downstream 184430 21150658 ~ 21151136 (+)
G13995 LOC107749107,LOC107659422,LOC107563825 non-coding downstream 185875 21152103 ~ 21153782 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding downstream 199860 21166088 ~ 21168887 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 453302 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 476475 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 488169 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 532345 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2799551 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 197714 21163942 ~ 21164822 (+)
G14211 NA other downstream 341179 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 514906 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 567017 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 748455 21714683 ~ 21716290 (+)

Expression


Co-expression Network