G13995 (LOC107749107,LOC107659422,LOC107563825)


Basic Information

Item Value
gene id G13995
gene name LOC107749107,LOC107659422,LOC107563825
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21152103 ~ 21153782 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU20644
CAGGCAGAATCATCATTAATTTTTCAGATGTTAAATAGCATCCAAAGAGATCCAGTTCCTGGAGGCACTGACAGAACTGAGAACAGTACAACAGAGCCCAGCAGTCTGTTCTTCTAAAGATTGCTGAATATGCATTAATCCTATTCCAGGATTTCATAGCTTTTGTCACATAGTCCTCTTCATGAAGTTCATAGAGACAGTGAAGAATAAAAAGGGTTCTATTATAACAAATATCCCTTTGGAGCTCTTTTAAAATCCACTCTTTAAGAAGGGCCTGTGTGTTTGGGTGAACAAACAGACACAGCGATTTCCTAAGTGTGTGTCGTACACCCTTATTCAAGAGACCAAACGCAAACTGAACCACAGCTGCACAACATGGAGGATGCTCTAACCATTCATTGTGTTGAAAGGAAATTAGCTGTGCAAGTTTTCTCTTGGACTCTTCTTTGTCCAGAATGACATAGTAGAGAGCGGTGAAAAATTCCTGAAAGCTGAGATGCATAAAACTGAACACCGTCTCCTGGCTGATTCTTCTTTTAAAGAGGAACTTGCAAAGAAACGGATTGCCAACAGGATCTGAAATTGTTTCATAAACAGTTCTTTCATCCAACAAGACTTGTTTTTCCAGTATCCCTCTCTCTGCCAGCTGACCCAGACTTATCAGCAGGCTCGGGACAGACTGACTCTGACCCTGGCAGTGATGCTCCAATAGAGTGGACACAAAGTCAATGTAGATGGAGGTGGTGGTTTCCAGTCCACTTGTTACATCCATACCAATTTTGAAACGTTCCTTGATAGTTGTGCAGACGATCCAACAGATGACAGGGATGGAGCAGGTAGTGAAGaggttttcatttgttttcacaaaCGTGAAAGCCCTTCTGAAAAGTTCCTCATCCTGAAAGAACTTCTGGAAGTACTCCTCCACCCCCTTCTCAGAGAAGCCCATAATCTCAGAGAAACGCTGAGGTCCTTTGAGCAGTTTACTCAGTATGTCTGTAGCTGTTGATCTGGAGGTGACCAGCAAGAAGGACTCTGGCATGATGTGACCTTTCAGCAGGGCACAAAGAGTGACCTCAGGTGAGGCTTTCTGAATCACATCAGTGTGAGGTGGCATGTAATAAATGTCCCGTGTGAGTTTCAGCTCATCAAATCCATCAATGATGAAAAGCACCTTCTCTGGTGACCGCTGCAGTATCTGTGAGATCTGATCCGATGTTAAACTGCAGCTGTAGCTCAAGATCTCCACCAAACTCTTTCTGCCAGAAATGcgatttatttctttacactTCAAGTGGAACACAATATCAAACCGCTCTTTGTAGATGTCACCAGACGCCCAGTCCAGCATGATCTTCTGTACAGCTAAGGTCTTCCCATTGCCTGAATTTCCCTGCAGTATGACAGCACTGGGGCTGATCCCATGGTTATCTGGGTTGAACAGAGAGTTCAGGTGGGAAGATCCATTACTGTCCCTGGAGTTGAGGACCTGCTGGAAGTTCTCTCCACTGGAGCGGagctcttcttctctctcttgttGATCTCTATGTCTCTGAAGAATCAGAGGTTGTGTGAAGCGCTCAGACAGCAGCACTTGTTCGCCAGGCAGTGAGTTATATTCGGTCACATACTGATAGTCACTGCAGATCCGTGTCTTATGTTTGAAAATCAATGATCTTG

Function

NR:

description
PREDICTED: protein IWS1 homolog isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20644 True 1680 lncRNA 0.44 1 21152103 21153782

Neighbor

gene id symbol gene type direction distance location
epc1b epc1b,LOC107563811,LOC107690579 coding upstream 6813 21131009 ~ 21145290 (+)
LOC122356829 itgb1b.1,LOC107749109,LOC107563812,LOC107690580,LOC107721729,LOC107660233 coding upstream 21774 21123039 ~ 21130329 (+)
itgb1b.2 LOC107749109,LOC107563812 coding upstream 29349 21116469 ~ 21122754 (+)
LOC122359068 itgb1b,LOC107749113,LOC107563813,LOC107659805,LOC107690578 coding upstream 36104 21099685 ~ 21115999 (+)
LOC122362210 nrp1b,LOC107659377,LOC107749105,LOC107721698,LOC107690577 coding upstream 56538 21073085 ~ 21095565 (+)
arhgap12a LOC107659443,LOC107749196,LOC107557799 coding downstream 31427 21185209 ~ 21204873 (+)
nlrb5 NA coding downstream 73541 21227323 ~ 21246000 (+)
zgc:152670 NA coding downstream 237336 21391118 ~ 21397540 (+)
kcnab1b kcnab1b,LOC107600068,LOC107721779,LOC107557878,LOC107692887,LOC107749128,LOC108428302,LOC108280191,LOC104919203 coding downstream 270044 21423826 ~ 21462693 (+)
pask LOC107749168,LOC107600066,LOC107659937,LOC107692875,LOC107721791 coding downstream 309016 21462798 ~ 21474564 (+)
G13994 NA non-coding upstream 967 21150658 ~ 21151136 (+)
G13993 NA non-coding upstream 2096 21149221 ~ 21150007 (+)
G13992 NA non-coding upstream 3591 21148180 ~ 21148512 (+)
G13976 NA non-coding upstream 185875 20961693 ~ 20966228 (+)
G13980 NA non-coding upstream 194967 20955935 ~ 20957136 (+)
G13983 kif5b,LOC108232928,LOC106522897,LOC106906931,LOC103138015,LOC106962517,LOC103479480,LOC101155960 non-coding downstream 12306 21166088 ~ 21168887 (+)
G14234 NA non-coding downstream 188589 21342371 ~ 21346101 (+)
G14212 LOC107557873,LOC107721701 non-coding downstream 212026 21365808 ~ 21370499 (+)
G14285 NA non-coding downstream 403062 21556844 ~ 21557398 (+)
G14315 NA non-coding downstream 562989 21716771 ~ 21717992 (+)
LOC122326305 LOC107749119,LOC107602627,LOC107566983,LOC107690079,LOC107721763,LOC107721764,LOC107678697 other upstream 643712 20493174 ~ 20508391 (+)
G13882 LOC107749119,LOC107602627,LOC107721764,LOC107659530,LOC107721763 other upstream 666885 20481664 ~ 20485218 (+)
gbp2 LOC107678697,LOC107602627,LOC107690079,LOC107721763 other upstream 678579 20467268 ~ 20473524 (+)
crlf1a crlf1a,LOC107602622,LOC107678692,LOC107588877,LOC107690059 other upstream 722755 20416203 ~ 20429348 (+)
rem2 LOC107583115,LOC107567555,LOC107668956,LOC107738122,LOC107706340 other upstream 2989961 18138644 ~ 18162142 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other downstream 10160 21163942 ~ 21164822 (+)
G14211 NA other downstream 153625 21307407 ~ 21361708 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other downstream 327352 21481134 ~ 21482642 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other downstream 379463 21533245 ~ 21621097 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other downstream 560901 21714683 ~ 21716290 (+)

Expression


Co-expression Network