LOC122327294 (aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582)


Basic Information

Item Value
gene id LOC122327294
gene name aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21843575 ~ 21853007 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU21366
CCTTGGAACTCTCCTCAGACAGCCACAGAAAAAACACAGAGCTTTTTCAGTCCGGAAACTGACAGTGCCTTTGGTAGTTTTGACCTAAGCCGGCCAAGCACAGGACTGTCCCAAACACCTTCTGGTGCTGTGAGTTCTGCACTCTCTGACAATGTCATCAGCATAGCGAATACTAGTGGTTCAGACAGTGAAGCCTCCCGCTCCAATGTACGAACTACTATATCAGTGGCACCACGACCTGTCCAGCCCGCAGTGAACC
>TU21368
GACACCGCACCAGCAGAGAGGAATCGATCCATAAGACACTGGACAAGGCCTTGCAGGCAGCTTTTCTAATGAAGCAGACCACAGACAGGATGGCAGACGCTCTCTCTGCTGACCTGGCCAAAGCTCAGCTCCAGAGGAAGTTACTGGGCCTAAATCCTCTCAGCAGCAGAGCTGGCAGTTAGCTgtgctgtaataaaataattttgtgcatCATCTGTTTAATAGTGTTTG
>XM_043222534.1
ATGCAGAGCTGTCAGAGTCATGTGGGACTGAAGAGGGCTCTTCAGAGGGTGCTGAATCAGAAAGGGAACGTACCCAAGGTGCCAGGACAGAAAACCACCCCTGTAGTGATTGAGAATGATGCTGTCAACACCAGTGATGAAGAACACGAAGAGCTTCCGTATGATGGTGCACACAGCAACTACAAAACAAAGATGAATTTAAAAGCATCTTCAGGTGAAATGGCTACTGAGATGCCTGCTGAGCACTTCTCTACTCTTGATAAGTTAAGTATGCAAATTGGTACTACAGAACAAACAGAGGATTGCCAATCTAATCTCACTCACTGTCTTCTATCCAATCAAAAAGCAATAAAGAATGTGGCTCCACCTGTAGCCACACCCATTCAACCTGCAGACCACATCAGTGACTTCCTGCTCAGACACTTTTCCAAGGAGGAGCTGCTTAACTCAAGCAGGATCATTGACGCTGAGACCCTACCCGAGATGTCCTTGATGGACAGCATTGATGAAACTGTGCATTCTCAAGCTCCACAGATCTTCATAGGAGAGAGTGAAAAGATTCAGGATGTGATAGAGGAGCTTGGTCAAAGCCATGGATTGGCTGAACTAAATGTTTCAAACGAGTCAAGCTCATCTAAGGAACCTGAGTCGACTTGCATCAGTGATGCTGCATCTGCTGGGGATGACGATGATAATAAAGAGTGTCCTAAGCAGAACCGCAGTGCTAACTCTTTAGATCTGTCAGAAGCAGATGTACAGAAACCTAAGTGCTCCTTCGGCAGGACCAGGTCCTATAGTGAGCTGAAATACGGACAAGGAAAGGTGCATTACCCGCTACCTGACTTCTCTAAAGTGGCACCTAAAGTCAAAATACCTAAAGGTAATGGAGGCTTTAAACCCATCAGCCCGTCACCAGCTATGGTCAGAGCTCAGTCGTCCCCAGGCATTCTGGCTAAAACAGCCTCATCTTGTAAACCAACAGCAGATATCATCAGCAGGGTTTTAGAGGACTCAATTATGCCACCGGAGAATGTGTTCGCAGACAAGGAAGTAGCACACCAGTTACAGGTTGAATATGACAGATTGCTTGCTAAATATACAGAATCTGAAAACCTAATTGGTCAGCAGTTTCATGCTTCCAGTGAGCCTTCTGTGACCATCGACTGGAATGATGCAACTAGCAACAATGAAAACACCAAACTGACAGCAACTAACCCACAAGCACCAGCCGCAGGTCCAAGTGAGAAGCAGTTTAGCCTGCAGAACTCTCAACCTGTGGAGACTGAATCACAGAGCctgacagatggagagagactGACCTCTGAGCTCAGAGACATCATCAGATCATTTATGgagaagGTGGATGAATTCAAAACGTGCGTCTCCGCCATGTCAATGAATAAAGAGGAGCAACAAATGGTGTTAAAGAGCATGATGGAGGCCCAGGATCAGCTGGAGAGGAATTACCTCACAAAGAGGGAGGAGCATCGAGCTCTGGAAATGCAGAACTACAGGGGTTTAACCAGAAACACAGGAGAGTTTGACCCTGACAGGGAGGTCGAGGGCCAGATTTTCAGGATAGGCATGCACTTGGAGGACATTAAAGAGCAGATTGACAGAAATGTGTGCCATGTTTTCTATCCTCCTTCATATTCCACTCCCTCTCCTCCACCTTGTGAAGATATCCGTGTCTCATCACCCCATCCATCACTGCATGAGGAGTCAGTCTTCAGCATCTCCCCTGTTAGACACAACACTGAGGACAACGATGATGAAGAGACCACTGAAGATCACACAGCTGATGGGTTATTTCCCAGcagaacagaaaacagcttcTATCTACAGTATTCCACCTTCTCCACTGAAACAGCTGGCACTGCCAATGTGGAACAGGAGAACAGACTGACAACAGGAGAGGACCAACACTATGAGGATGTCCTGGCACAAGCATCCTCTTCAACTTTATTAAAGCAGCTGACACATGATAGGCATGAAGAGAAGATCAGACATCGTGAAGCCGCTTCCACTTCTGTAGAACCGTCTCCTTGGAACTCTCCTCAGACAGCCACAGAAAAAACACAGAGCTTTTTCAGTCCGGAAACTGACAGTGCCTTTGGTAGTTTTGACCTAAGCCGGCCAAGCACAGGACTGTCCCAAACACCTTCTGGTGCTGTGAGTTCTGCACTCTCTGACAATGTCATCAGCATAGCGAATACTAGTGGTTCAGACAGTGAAGCCTCCCGCTCCAATGTACGAACTACTATATCAGTGGCACCACGACCTGTCCAGCCCGCAGTGAACCACCTGGAATATGGACAGATAGTAACACAAATCATGGAAGTTAGAGCTCCAAAAGAAGATGATACGTCAGTTGGTGCCACGCATAACCAGGCGACTGAAAGAATAAGAGACGATCCGCTGGGAAAGAGCCGTTCTGCGCATGAGATGCACACGGCATCACACTGCTCATGCCACAACAGTGAGGTTATTCTTGAGCTGCAGTATGAGGTTTCGCGCCTCAAGAGGGCGCTAGAGGAAAGCCTTGGTCACCTGCCTCATGATAGCAAGAAGACTGATTATCTGAATGGCAGGTATCCACTGGAGAGGAAGCACAAGGGACAGACCCGTAGCCAGAACAGAGGCTCCTCTAGCAGACGCGTGAAGCCAGACTCAAACCTTCAGACGATTGAGGACTGGATCTCTTCTGATATGGAGCTCAGCAAGAGCAAAGTCACTGAAGGAGAGGATTCTGATCGCACCATCAGTTTACAGAGAGCCTTCAGTCCATCTCATGGACTTATATGCACCAGATTCAGTGCTGACAAGGGGTCACATGATTCCAGAACCTCATCCAAAACCTCAGTAGAGAGCTTTCCTATGGACACATCTCAGTTTATCCTGTCTGGTAGCCGTCGGAAAGCTAGCATTGGGCCAGCAAACCACAGCACTGACACCGAGCCAACCAACAAAAGTGCCAGCTACAGACCTGCAACGGGAAACTTCTTAAACAGCACAAAACTTGCCCCTTCTATTCCTGTTCATCCTTCCCATAAGCCATTGCTGCAAGTCAACTATGGCTCCTCTTGCAGTCTACCTGCTGGATTTAAAGTGCGAGATCAAACATCAGAACCAGTGTCCACTAAGAGGCGCTCGACTCAGTCTGACTCAGCACTgcttcccagtaatgtcttctTTCAACGGACCTCACCGAGGACCAGTGGAAGACGACACCGCACCAGCAGAGAGGAATCGATCCATAAGACACTGGACAAGGCCTTGCAGGCAGCTTTTCTAATGAAGCAGACCACAGACAGGATGGCAGACGCTCTCTCTGCTGACCTGGCCAAAGCTCAGCTCCAGAGGAAGTTACTGGGCCTAAATCCTCTCAGCAGCAGAGCTGGCAGTTAGCTgtgctgtaataaaataattttgtgcatCATCTGTTTAATAGTGTTTGGGGTTTTGCAATGTCAAATATTAAAGCTGACTTGAAAGCTtgtcttttgtaatatttgtaataatgatCACTACCAATCGGGAGCAGAATAAGTCCTCTTAATATAGCCAAAATATTTGGAATAACACAAAATTGTGATGCAATTATAAATACCAGATTAGAACAATACCAG

Function

symbol description
aknad1 Orthologous to human AKNAD1 (AKNA domain containing 1).

NR:

description
PREDICTED: AT-hook-containing transcription factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21366 False 259 lncRNA 0.51 3 21849207 21850069
TU21368 False 231 lncRNA 0.33 2 21851904 21852835
XM_043222534.1 True 3629 mRNA 0.47 20 21843575 21853007

Neighbor

gene id symbol gene type direction distance location
nlrp1 NA coding upstream 16343 21818882 ~ 21827232 (+)
LOC122358999 NA coding upstream 24413 21815200 ~ 21819162 (+)
wdr47a wdr47,wdr47a,LOC107749106,LOC107730459,LOC108428282 coding upstream 34243 21794688 ~ 21809332 (+)
camsap2b camsap2b,LOC107749095,LOC107730450,LOC107692873,LOC107660032 coding upstream 49985 21754405 ~ 21793590 (+)
LOC122355713 LOC107578657,LOC107730436,LOC107692891,LOC107692896 coding upstream 138681 21702091 ~ 21704894 (+)
fndc7rs1 NA coding downstream 43669 21896676 ~ 21911669 (+)
trnam-cau_1 NA coding downstream 75740 21928747 ~ 21928819 (+)
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding downstream 76290 21929297 ~ 22026087 (+)
gpc1b gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591 coding downstream 191861 22044868 ~ 22105101 (+)
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding downstream 281347 22134354 ~ 22326172 (+)
LOC122359002 NA non-coding upstream 30672 21810929 ~ 21812903 (+)
G14316 NA non-coding upstream 123000 21719918 ~ 21720575 (+)
G14315 NA non-coding upstream 125583 21716771 ~ 21717992 (+)
G14285 NA non-coding upstream 286177 21556844 ~ 21557398 (+)
G14212 LOC107557873,LOC107721701 non-coding upstream 473076 21365808 ~ 21370499 (+)
G14476 NA non-coding downstream 41601 21894608 ~ 21895131 (+)
G14477 NA non-coding downstream 42164 21895171 ~ 21895478 (+)
G14484 LOC107568745 non-coding downstream 60513 21913520 ~ 21915028 (+)
G14532 NA non-coding downstream 614853 22467860 ~ 22472603 (+)
G14535 NA non-coding downstream 622774 22475781 ~ 22476202 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 127285 21714683 ~ 21716290 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 222478 21533245 ~ 21621097 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other upstream 360933 21481134 ~ 21482642 (+)
G14211 NA other upstream 481867 21307407 ~ 21361708 (+)
G13998 LOC107659744,LOC107749160,LOC107563810,LOC107563823 other upstream 678753 21163942 ~ 21164822 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other downstream 4205 21857212 ~ 21867399 (+)
G14471 NA other downstream 7884 21860891 ~ 21861442 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other downstream 608909 22461916 ~ 22485655 (+)
LOC122327931 NA other downstream 780522 22633529 ~ 22674275 (+)
fcer1gl LOC107671799 other downstream 838192 22691199 ~ 22695330 (+)

Expression


Co-expression Network