fndc7a (fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736)


Basic Information

Item Value
gene id fndc7a
gene name fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21857212 ~ 21867399 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU21373
AAATGGGGCTCGCGGATGTGACATCTCTGAGATCCTGTGTGGGGAAGTGTACACCGTCGTAGTCGCTCCCTTAACACAGGACGGTTCGAAGGTCAAATACTGCCCCAGAAGACTCTACTCAGtCTCCTGTTCTGGAAACACGGTGGGAGTGGTGATCTATCAAGGCCGGACGAGTGTGAACTAAGACCTTATTGGCACAGATGAAAGAAGACGGAGCTCTGCCGTCATCAACGGAAACAACGGGGCATTCTCTTCTCAACA
>XM_043219847.1
GGAAGTGTGCCCTAAAGGCAGCTGATCAGCACAAAATTTGAGGCATGGAGTCGAAATATTTACATCTTTCTAATATTGTCTTATTGATTATTACTGTGCCACagATATGCAAAGCAACCGACCTCACGTTATCCGTGTTTACCGTCACCTCCAAAAGTATGACGGTCCGTTGGAGCGGACACACCGGCGCGAGCTCCTACAAAATCACCGCCACGCCGAAAAACTCCCCAGAGCCGTCTGTTTTCGCGCAGTTCAGCGGCAGCACGGTGATGGGCTCCGTTAACTCGTTATCCCCAAACACCGTGTACAGGATGCGGGTCGAAGCCATGGACAACGCAGTGAACGTGCTCAGCAGCGCCGAGACGGAGGAGACCACAGCTCCCGAGGTTCCCTTCGTACAGAAGACTTACTCCAAACACAGTGACAGCATCACGGTGGAGTTCGGTGTGGTGTCTGGTGCCACCAGCTACATCATCCGGGCAGAAAGCGAGGATGGGTTCTTCTCTGAGCCTGGTAAACACGTCCCTGGGACAGTGGTCGGTCTGCTGCCTTACACCCAATACACCCTCAGCGTGATGTCTGTCAACACTGGGGGAAGGAGTCAGCCTTCACTACCTGTGAATGCTAGGACAGTGTTGGTAGCCCCAGATCTGAATTCCAGCTCTTCCAGCAGTGACACCATCATGATAGGTTGGAATCCAGTGGACCACGCTGTGCTGTACAGTCTGATCATGACCATGGAGGGCTCAGACATTCGGGTCAGGCTCAACACGTCTATGACCAATGTGACCTTCTCTGACCTTCAGCCTGGAACCACCTACAGCGTCAAGGCCTATGCCTGGGATCCAGATGGTAACCAAGGAGATGAGATCACTGTCTACCAAATCACACGTCCTCCTATCCCGGGAGATGTGCAGGTTCAGTTGACGCCGGGTCGCTCTATCGATCTGGCGGTGTATTGGCAGATAGTCCGAGGTGCCGATGGGTACATTGCTGTGAGCTCAACGGGGCAAAACTGCAGCTCCTCCTTGGATCCCTACTGCATAATCAGTCCCCTCAGCTGCAGCCAGAACCACAGCATCACCGTCATAGCACAGAATGTGGCCGGACCCAGTGAACCTTCAGCTCCACAAGACCTTCTCACCTTCCCATGTCCTCCTGAGCTGGTGTTGATTGATGAGCCGATCACAGGGAACTGCTCCGTCACGTGGTCTCAGGTTCAGTGGGTGGATTACTATATCGCCTACATGAAGAGAGATGATGGTTTAGAGGAAAACTGCAACACCACTGGCACGACATGCTACTTCCAGTGCATATGTGGATACACGTACCTCTCAACCGTGTTCGCTTACAACCTGGCCGGGACCAGTCCACCGGGTCAAGTAGTCAACTATACTACAAtcCCCTGCTGTCCAGACACTTTGTCTGTGTCTCTGATTTCCACCGAGACTTTAGAGATCTCGTGGTCTTCAGTTCGAGGAGCTGAGTTGTATGAGACAATTGCCGCAGATGGAAGCGAGTGGATCCACTGTAACGACACGTCTCCTGTGTGCGCGCTCTCTGATCTCACCTGTGACAGCCTGTATAGTGTGGTGGTGCGGCCCTGCAGTGAGACACAAGGATGCAATAACACCTGTAGTGCACATACACGCCGAACAGcTCCGTGTGCCCCTGTGATTCTCAACGTGACTCAAGTGAACTCTTCCACGGTGGAGGTGTTCTGGACGGCTACAAACAGCAAGGCTGACTACACTGTGACCGCCGTGGGTTTCTCCACCATGCTCATCTGCTCATCCAACGGCACTTCCTGCTATATCAGTGTGTCCTGTGGATCCACATATGATATCAGCGTCTACGCCACCACCGCAGCAGGACAGAGTCTTCCCAGCTACTCAATTCCCCTGGAAACAGGACCCTGTTGTCCAGAAACTCTAAGTGTTGAACAGGTGACACAGTCTATGACGAATGTCACTTGGTCGATTGCCACAGGGGCACGGTCTTACATCACCTCTTTGACATCCCCCAGAGGTCACGCCAGATGTCACACCATGGACACCCACTGCCTGCTGGGATGCATCACATGTGGCACCAGCTACAACGTTTCGCTGGAGGCCTTCAGCATTACTGGACATAAATCGGAGTGCAGTTACCACGGGTTCTCTGCAAGTGCGTGTTGTCCGTCCAGCGTGAGACTCTACCGGATGGATAACAACACTCTCCGGGTGTATTGGCGCTCTTCTCCGGGCCTGTACAACTACACAGCTGACCTGCACGGTACCAGATCCAACTACACCTGCAGTGCCACAAATGGGGCTCGCGGATGTGACATCTCTGAGATCCTGTGTGGGGAAGTGTACACCGTCGTAGTCGCTCCCTTAACACAGGACGGTTCGAAGGTCAAATACTGCCCCAGAAGACTCTACTCAGtCTCCTGTTCTGGAAACACGGTGGGAGTGGTGATCTATCAAGGCCGGACGAGTGTGAACTAAGACCTTATTGGCACAGATGAAAGAAGACGGAGCTCTGCCGTCATCAACGGAAACAACGGGGCATTCTCTTCTCAACAATTTCATCTCCCCACATTTATATACTGTTTGTCAGCAACACCTACAATAATTGGCTCTATGAAAATGTGTATCTTTAAGATCTtctaaacatgaaaacaaaaacgtatatttGTCAATCAAATTGTTAACCATTTCTAAATGTGCGATATTTTGTATGCATACATTTCCTTTGTATTATGAAGTTTGCATTTATACTGTAATTTTCTTCAAAGCATGTCATGGAGCTCAAATGTTTACATGTCTACAAAACAATAAGTAATGTCATAATGTCAtgaaaaaatgactaatttattgTAGCGTAATGATTGGAAAAACGCTATAAGCATTTGTAGGAATTCCCCTAAGCAGCAAGCCTCCAAAGGGAGTGGACCTGTGTGTTTTATACAGGGTGGACCTCCTCTGAACTAGGATGGGAAATTTGAACAGCACAAGTTTCATGTTCAGTGTCCGCCCCAGGTCATGTGTCCTTTGGATGATATATTACATTGAATTtgcaaaatatgtatgtttgcTAATGACCTACGGCCTGAGAACTTCAATACAATACCTTTAGTACTCT

Function

symbol description
fndc7a Is expressed in neuromast support cell. Orthologous to human FNDC7 (fibronectin type III domain containing 7).

NR:

description
PREDICTED: fibronectin type III domain-containing protein 7-like

GO: NA

KEGG:

id description
K24487 FNDC7; fibronectin type III domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
TU21373 False 261 lncRNA 0.52 4 21865738 21866839
XM_043219847.1 True 3126 mRNA 0.50 15 21857212 21867399

Neighbor

gene id symbol gene type direction distance location
nlrp1 NA coding upstream 29980 21818882 ~ 21827232 (+)
LOC122358999 NA coding upstream 38050 21815200 ~ 21819162 (+)
wdr47a wdr47,wdr47a,LOC107749106,LOC107730459,LOC108428282 coding upstream 47880 21794688 ~ 21809332 (+)
camsap2b camsap2b,LOC107749095,LOC107730450,LOC107692873,LOC107660032 coding upstream 63622 21754405 ~ 21793590 (+)
LOC122355713 LOC107578657,LOC107730436,LOC107692891,LOC107692896 coding upstream 152318 21702091 ~ 21704894 (+)
fndc7rs1 NA coding downstream 29277 21896676 ~ 21911669 (+)
trnam-cau_1 NA coding downstream 61348 21928747 ~ 21928819 (+)
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding downstream 61898 21929297 ~ 22026087 (+)
gpc1b gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591 coding downstream 177469 22044868 ~ 22105101 (+)
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding downstream 266955 22134354 ~ 22326172 (+)
LOC122359002 NA non-coding upstream 44309 21810929 ~ 21812903 (+)
G14316 NA non-coding upstream 136637 21719918 ~ 21720575 (+)
G14315 NA non-coding upstream 139220 21716771 ~ 21717992 (+)
G14285 NA non-coding upstream 299814 21556844 ~ 21557398 (+)
G14212 LOC107557873,LOC107721701 non-coding upstream 486713 21365808 ~ 21370499 (+)
G14476 NA non-coding downstream 27209 21894608 ~ 21895131 (+)
G14477 NA non-coding downstream 27772 21895171 ~ 21895478 (+)
G14484 LOC107568745 non-coding downstream 46121 21913520 ~ 21915028 (+)
G14532 NA non-coding downstream 600461 22467860 ~ 22472603 (+)
G14535 NA non-coding downstream 608382 22475781 ~ 22476202 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 4205 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 140922 21714683 ~ 21716290 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 236115 21533245 ~ 21621097 (+)
LOC122354659 LOC107749134,LOC107659944,LOC107600069,LOC107692888,LOC107557869,LOC107721709,LOC101885494 other upstream 374570 21481134 ~ 21482642 (+)
G14211 NA other upstream 495504 21307407 ~ 21361708 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other downstream 594517 22461916 ~ 22485655 (+)
LOC122327931 NA other downstream 766130 22633529 ~ 22674275 (+)
fcer1gl LOC107671799 other downstream 823800 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 1135766 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 1677707 23545106 ~ 23547974 (+)

Expression


Co-expression Network