G14484 (LOC107568745)


Basic Information

Item Value
gene id G14484
gene name LOC107568745
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 21913520 ~ 21915028 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU21388
CTGGAATGGCGCCTATCTCCATGCCTTCCTGAATCAGCTGCTGCTGGCTCCTCTTCTTCCGGCTCCTCTTTTTGTGGAGGTTTACGTGGTCGGCTCTTCATGTGCTGGTCGATTGCTTTCTGCACAGGAACAGGTATACGTGGGAACAACGTTGAGAACCATTCCAGCTTGGTCAGGAAGGAGCGGAGCATCTCTCCGATCGTCATTACACATCCCCCTCCAGCCTTCACGTCCAACTCCTGACCACAGACACAAAGAGGAGGAAAACGATTAACACTACAATCACAAACATCACACTCAGACATGCGCTAAATCGCACGAGCTCTTGTATACATGTTAAGGCTAATAATTAAACCATATGCTATCCTGAATAAAATGCTTCATTTGTGATGACCAAATACTGagtcttcacctctgctctcaCCTGACTTAATATTCAGTACTTACAGGTGCACAAAGTAATTTTGTTGTAATAATCTGCATATACAAAAAGAATACCATCATTTAAATACCTTTCTCATTAGCTACAAAAGGTGCCATTTCATAATGGATCTTTAGAGCACCTTTAACGTAAGTGGAAATCTTAGACTacatttactatattatattgattttaaatagatCAAAACACTGCATGACTTCAAAATAATTAGCTTCCACAATGTCTCTTACTATGCAATGACTCAAAATAGGTGCGATGCAGAGGAGGTCGTAGGTCAGCTGACATATATATGCTGTACCGGTGCGTGTGAAGGGGTGGAGTGGGTGGGTGAGCTTGTCTAACTGCACTCACGAACGCCAGCCAAGAGTGTGGAGCACACCCTATATCCAATCCACCCGCATCACAAGGGCCATCTGGGAGAGAGAACAGGGCAGTCAGCCAGAGACACACATAACCACCATTGCTAAGGTGCTGATCTCTGAACACTAGTCATCTAAAGACTTGGGTAAActtgccaacacacacacagctgtaaaTATGTATCTCAGGAGGAACATTAAGCCAAATGAGGTCAAAGGTTGAAGGACAGCAATGTGCATCACAAGCAGCATTTGGCCTAAAGCTTACTGGTTACAACTGGGTTACGTTAGAgttaaaagagagagatgaaggcATTACCCGTGGTGACATAC
>TU21389
CTGGAATGGCGCCTATCTCCATGCCTTCCTGAATCAGCTGCTGCTGGCTCCTCTTCTTCCGGCTCCTCTTTTTGTGGAGGTTTACGTGGTCGGCTCTTCATGTGCTGGTCGATTGCTTTCTGCACAGGAACAGGTATACGTGGGAACAACGTTGAGAACCATTCCAGCTTGGTCAGGAAGGAGCGGAGCATCTCTCCGATCGTCATTACACATCCCCCTCCAGCCTTCACGTCCAACTCCTGATATGCAATGACTCAAAATAGGTGCGATGCAGAGGAGGTCGTAGGTCAGCTGACATATATATGCTGTACCGGTGCGTGTGAAGGGGTGGAGTGGGTGGGTGAGCTTGTCTAACTGCACTCACGAACGCCAGCCAAGAGTGTGGAGCACACCCTATATCCAATCCACCCGCATCACAAGGGCCATCTGGGAGAGAGAACAGGGCAGTCAGCCAGAGACACACATAACCACCACCTAAGGTGCTGACCACTACCACGCCTGGCAGCAATTTCTGCTCAAAGCAAATTAGATCTCCTTTTCTGGACTAGTTTTAAAATGGATAATACATTACCAACTCCTTTACAGGTGAGAGTGGGCGTGCAGGAGCACAAGAGATGAGCCAGCACCCAGTAATGGATATCTGATACTTACGGTCAAATATAAATGTCTATGAATCACGGAGGCATGCTGCCATATACACACTTATCTTGGCTAAGAGAATACTGCATGCAACTTACGATTTAACCATAGGGAAATCGCCAAGGAACTTCTAAACTCAAAAGGACCATTGCTAAGGTGCTGATCTCTGAACACTAGTCATCTAAAGACTTGGGTAAActtgccaacacacacacagctgtaaaTATGTATCTCAGGAGGAACATTAAGCCAAATGAGGTCAAAGGTTGAAGGACAGCAATGTGCATCACAAGCAGCATTTGGCCTAAAGCTTACTGGTTACAACTGGGTTACGTTAGAgttaaaagagagagatgaaggcATTACCCGTGGTGACATACCTCCTCGTCGTCAAGGAACTCATCATACCAGTCAATCAAGTCAGGAGGAGGTTGAGTATAC

Function

NR:

description
PREDICTED: pre-mRNA-splicing factor 38B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21388 True 1134 lncRNA 0.53 2 21913520 21914967
TU21389 False 1080 lncRNA 0.40 2 21913520 21915028

Neighbor

gene id symbol gene type direction distance location
fndc7rs1 NA coding upstream 1851 21896676 ~ 21911669 (+)
nlrp1 NA coding upstream 86288 21818882 ~ 21827232 (+)
LOC122358999 NA coding upstream 94358 21815200 ~ 21819162 (+)
wdr47a wdr47,wdr47a,LOC107749106,LOC107730459,LOC108428282 coding upstream 104188 21794688 ~ 21809332 (+)
camsap2b camsap2b,LOC107749095,LOC107730450,LOC107692873,LOC107660032 coding upstream 119930 21754405 ~ 21793590 (+)
trnam-cau_1 NA coding downstream 13719 21928747 ~ 21928819 (+)
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding downstream 14269 21929297 ~ 22026087 (+)
gpc1b gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591 coding downstream 129840 22044868 ~ 22105101 (+)
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding downstream 219326 22134354 ~ 22326172 (+)
epb41l3b epb41l3b,epb41l3,LOC107689342,LOC107729731,LOC107750217,LOC108427206 coding downstream 600377 22515405 ~ 22549867 (+)
G14477 NA non-coding upstream 18042 21895171 ~ 21895478 (+)
G14476 NA non-coding upstream 18389 21894608 ~ 21895131 (+)
LOC122359002 NA non-coding upstream 100617 21810929 ~ 21812903 (+)
G14316 NA non-coding upstream 192945 21719918 ~ 21720575 (+)
G14315 NA non-coding upstream 195528 21716771 ~ 21717992 (+)
G14532 NA non-coding downstream 552832 22467860 ~ 22472603 (+)
G14535 NA non-coding downstream 560753 22475781 ~ 22476202 (+)
G14540 NA non-coding downstream 597143 22512171 ~ 22513937 (+)
G14541 NA non-coding downstream 607383 22522411 ~ 22586250 (+)
G14542 NA non-coding downstream 661995 22577023 ~ 22578223 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 46121 21857212 ~ 21867399 (+)
G14471 NA other upstream 52078 21860891 ~ 21861442 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 60513 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 197230 21714683 ~ 21716290 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 292423 21533245 ~ 21621097 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other downstream 546888 22461916 ~ 22485655 (+)
LOC122327931 NA other downstream 718501 22633529 ~ 22674275 (+)
fcer1gl LOC107671799 other downstream 776171 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 1088137 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 1630078 23545106 ~ 23547974 (+)

Expression


Co-expression Network