LOC122327302 (LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972)


Basic Information

Item Value
gene id LOC122327302
gene name LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 22461916 ~ 22485655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU21457
CAGTGTTCCAGAGGACCTGAGCGAGCCCTTCTACAGGGACCAGTATGAGCAGGAGCACCTGAAGCCTCCGGTGGTGGGCCTGCTGCTGTCAGCGGAGCTGTACTGCAGAGCAGGAAGTCTGATCCTGAAGAGCGACGCCGTCAAACCTCTGCTGGGTCATGACGCCGTCATCCAGGCTCTGGCTCAGAAAGGCCTGTACGTCACCGACCAGGAGAGACTGGTGACCGAGAGAGACCTGCAGAAGAAACCCATTCAGATGGTGAGATCTTGGATATTACGCTTAAACAGCGAAGAACGCAATCTGATTTTCTGACATCCAATTCAGGCCACTTTCAGCTGTAGTTAAATCTGTTACCAACGATAAACTCCACTCTTGACCGGCTCGCTAAAACGTATTGTGATTGGTCAGTTTACATGCTGATCAAAAAGTGAccctttatatttattctgcTGCACCAGAATAAAcctatgaattattaattgataaatgacagatattaaaatgaaatatatgtaatattgtattgcgctatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagttaaACTCTCTAGAAgagttcaaatgttttttcattgtacaTTTCAATtgatctcaatcaaactgcagttgggttttTATTGACTAggttaaaacaaaactttaaaaatccGCTAACGCAACATGACAAcatcataaaaaacatgatttttgaaaagtcATAATAATCATTGTTATAATATgtccatttttatatatactatattcggtattttcagttttttatttaggcctatttattttag
>XM_043222559.1
ctcctttttttccAGGCCAGTGCGGCAGGCGGACCGCAGGGAGAGCGAGAGATTTTTAGGAAGGACAGTTACAAAAGTTAAAGAAGACGAGAAATCATGACACGGAACAGCGAACTCGTCGATCGCCTCTCCTCGCCCCTCAGCTTGACATCGCTCATCACGGCGCTCGTGTCACCTATGAAATACTGATTTTTGCCATCCACACCAACTTGAGGATATAATGCCGGGAAATGGATGAGAACTACCGCAGTCGCCTGGAATTGCTTGTTGGATATTGAATCTGGCGCTCGGGGATGCGGTCGGGTTTGTTTTCCCtctatataattaatatatgagAGCAGAGATCTTGGGCCAGTCCGTTATTTTTCACATCGCCGCTCTGATCTCATAGTTCCGCGGGACGCGATGCATCGACCCGCTCTGTGTTTTACTTTCATGCTTTTTTATATTGCGTTTTTATGTACAGCACTTTGGTTCCACTTCGGGGTGTTGAAAgtgcttttgaaataaaactgagTCTGGAGTAGATGTCAAGATGGGTGATGCCGCAGAGATCAAGGAGAGCAGGAGGACGTTCATCGTGCCCGCGATCAAATCTGTTGATCACTACGACTTCGCCAGGGCCAAGATATCGTGCAGTTTGACGTGGCTCATCGCCAAAGCCTTTGGATCTGACAGTGTTCCAGAGGACCTGAGCGAGCCCTTCTACAGGGACCAGTATGAGCAGGAGCACCTGAAGCCTCCGGTGGTGGGCCTGCTGCTGTCAGCGGAGCTGTACTGCAGAGCAGGAAGTCTGATCCTGAAGAGCGACGCCGTCAAACCTCTGCTGGGTCATGACGCCGTCATCCAGGCTCTGGCTCAGAAAGGCCTGTACGTCACCGACCAGGAGAGACTGGTGACCGAGAGAGACCTGCAGAAGAAACCCATTCAGATGAGTTCCCACTTGGCGATGATTGACACTTTAATGATGGCGTACACAGTTGAAATGGTCAGTGTGGAGAGAGTGATGACCTGCATACAGAAATTTACTCCTTTCCTTCCTGAGGAAGACTTCCCTTATGATGCTGAAGAGGCCGTGATATCATGGATCAACAAGGTGAGATCCCTGCAACTAACATTACATGTAAGAATTTCTGAGTGCCCCTTAACTGGATcagtttataatgcatttttcttgttgttatggCAACTGCTCTTCGTGCGTAATCCACAGGGGCGGTACAGGAGAGAGGACTCAAAAGCACGTCCggttctttctctccctctggtGGACAATCTCTTGAAGGACAACACAGACGGCTGCGCGCTGGCTGCACTACTGCACTTCTACTGTCCTGATGCTGTGCTACTGGAAGATATCTGCGTCAAAGAAACAATGTCATTGGCTGACAGTCTGTACAATCTCCAGCTGATCCAGGAGTTCTGCAGAGAAAACCTCAACAACTGCTGTCACTTCACCCTGGAGGATATGCTATATGCCTCCACCACCATTAAGagtAACTACCTTGTGTTTATGGCTGAGTTATTCTGGTGGTGTGAAGTTGTGAAACCATCTTTTGTTCAGCCTCGAACACTCAATACCAAAGCATCTGATCCATCGCAGTCTAATAAAATGGCTCCAATAACCAAACAAAACCTGATCCACAGACCAGGCAGTCCAGACCAGTCTAGGTCACAACCTAAAAATGACAGCTCAGCAGTTATCAGGCGGTCATCCTCCATGTCGTATGTGGATGGATGTGTGGGGACATGGCCTAAAGAGAAACGaatacctctGTGCATTCCAGTCTTTGActtgttcttgtttttccagCATAACGTCATGGTTTTCATTGCTGAGCTCTTCTGGTGGTTTGAAGTAGTGAAGCCGGACTTCGTAAAGCCAAGAGACCTCCAAGAGATCAAAGACGTGAGAGCGTCTCTTCAGCCAAAGAGTTCCCGCCCCCATGTGCCCATATCCAATGCCACCAAGAGAAGCTTCTTAACCCCGTCTCCTTCAGCCGACTCGCTGGCGACAGCCGCCACTCCCGAGGGCTGTGTGCGCTATTACCTGCACCCTGAGGAGTCCTCGTCTGTAACAAACAGAAGCCCCTCCCACAGCCCCTCCCACCCGCTCCTCCCACTGCGGCAGAGACAGCAGAAGCCCACTCAGGGGGAGGAGCATTCAGAGCTCAGGAACAGGTCCAACTCTCTGTCCCGTATGGATGGACTCATGCTTGGATCACAGTTTGCCTGGACAGAACGGAAACAAAGGCCCATCTCTCAGATGGAGATGGACTGGGAACGTGTATGTGGCGATAATATCAGCTTGGCTCGATCCATAAGCAAGGACAGTTTAGCTTCCAACGTCATCTCCATCACTCCACGACACCGCATCAACGGCCAGCCCCTCCCCCAGACACGTCACTATGACAaccaggaggaagaggaggagctaCTGGCCGTGATTAACCCAGAGGGCGCGTCTGCATCCAGAGACTCAAAAGCCGAGGGTTTCTTCTTGGAACCGTTGCAGCCTGCGGTTCTACGCCCGAATAAGGAGAAAACGGGGGTTAGTAAGTGGGAGGAGAGTGGAGAGGGGAGGAGTCAGGGGCGGCGAGGGGCGTATACTCCTACAGAATGCACTCTTAACCGGACGTTTACGCCGATCGGTAGCACCGAGCGAGCAAGCTCTCGAACGCAATCTCCCGGAAGCTTCTTCCTTCACGAAGACGTGGAGTGCGTGAGGGACAGTCCTCTCGGAGGCTGGGAGGACATCGTCTCCGATTCAGAGtttgaggaggatgaggaaatagAGGTCCAGGAGCAAGAGCTCTCCAAAGCTGTTCTGATGCACGCTGGGAGGAAATGCacgggagaggaagaggagtcTGCGAAACTGCGCGAGGACGTTTGCTTGCGTGAACGGGACGATAAGGAAGGCGCCAGTGGACGGGCGAGTCCCTGCCCCAGCATGCTGTCGCAGGCCAGCAGCACATCGACCGGCACTGGCCGCATGACGAGCTTCGCAGAGCGCCGCAGACACCGAGTCGGGTTCCCCGATGGCTGCTACAGCACCGGGAGCTCGCAGACGACCACTCCTGACGGGTCAGAAAGCGTGCAGTTCCCTGTAGACGCGAGTCCAGGAACGCCAAGCGGCCGACCCGGGCTCGCTTCCGAACTCGTGCACCTTCGCATGCAGCTGGAGGAGAAACGGCGCGCTATTGAGATGCAGAAAAAGAAGATGGAGAACCTTTCGGCTCGGCAGCGGCTGCAGCTGGGAAAAGCGGCGTTTCTGCATGTCGTCAAAAAGGGGAGGAGCGACACGCTGCCACACCCACTCAAAACCGGAGTCGCGTTTAAAGAAAAGCCACTCGCGAAGGACGACTCGTGTGTTGAGGTTCTGAAAGCCCAAGGAAAAGACTCAGAGTGTAAAGAAACTCCGGTAGAGGAGGATAAGGACAATCGTTTGAGTGCAACTGGAGGGGGCGGGGCTTCGGATGATGTGGGCGGAGAACCAGATCTTAGCGAATGTAGCCGTTCCATTGAGCTCCTCAACGAAGCGATCGGAGCAATACAGCAGCAAATGATGCAGCTGTCTGTCCAGCAGGATTTGCTCATGAAACAGACCGTCCAGTCCCCGCCGGAGACCAAACCGAGCACTGTGCCGCCCTTAAACGAACTCCCGCCTGAGCAACCTGAGGTGAAGTCGCGCCTCTCCGTGCAATTCACGGAAACCCTTTCCACGGCGACCAAACGTCCTCCCAGGCTCAGCTCGAGTCGTACACCTCGGACCAAACCCAGCGACCTCAAACTGAGCAAAGATACAAACGGTCGTCCAGCGACAAAAGCCAGCACTCCGACACCGGGAGGCAGGACCCCCCGGGCTGAGAGTGAGGAAGAGGGCGGGGCTAAAGATGGGGGGCGTGGATTAAAAGGAATTATTCGCAATACTACTTTCAGACTGCAGGATGCCGCAAACCGACGCGCCGACAGCCTCGAGTCGCCCCAGAGCGAGCTCCCTCCGGTGGAGCCGTCGCCCGTGGATCTGACCCGGGAGCGGAGCGAGTCCAGCGGCTCTGGAAAGGAGAACGTTCCCATTCCGTCCGAGGAGAACAGAACGAAAGCACAGCTGATCGAAGTGGACCTATCTGACCTGGCTGAACCGGCTGAAACTAGCACAGAAACTGACGGGGAACAGAAATCTGGACTGGGCTTCTTCTTCAAGGGTAAAGTGAGAGGGGGTCAGTGTTTACGGACCTGA

Function

NR:

description
PREDICTED: calmodulin-regulated spectrin-associated protein 1-B-like

GO:

id name namespace
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21457 False 820 lncRNA 0.40 1 22463034 22463853
XM_043222559.1 True 4243 mRNA 0.54 15 22461916 22485655

Neighbor

gene id symbol gene type direction distance location
LOC122324242 ephb1,LOC107549839,LOC107671589,LOC108430182,LOC106599529,LOC103359190 coding upstream 135744 22134354 ~ 22326172 (+)
gpc1b gpc1b,LOC107660106,LOC107749182,LOC107730456,LOC107549820,LOC107600088,LOC107671591 coding upstream 356815 22044868 ~ 22105101 (+)
gpc5c gpc5c,LOC107749179,LOC107660087,LOC107671592,LOC107730460 coding upstream 435829 21929297 ~ 22026087 (+)
trnam-cau_1 NA coding upstream 533097 21928747 ~ 21928819 (+)
fndc7rs1 NA coding upstream 550247 21896676 ~ 21911669 (+)
epb41l3b epb41l3b,epb41l3,LOC107689342,LOC107729731,LOC107750217,LOC108427206 coding downstream 29750 22515405 ~ 22549867 (+)
LOC122357060 NA coding downstream 76857 22562512 ~ 22572000 (+)
LOC122323627 NA coding downstream 106944 22592599 ~ 22601454 (+)
foxl2b LOC107574316,LOC107730743,LOC107683772,LOC107750224,LOC107549802,LOC107684570 coding downstream 153231 22638886 ~ 22640594 (+)
pnp5b pnp5b,LOC107730396,LOC107574318,LOC107750205,LOC107549813,LOC107684565 coding downstream 173409 22659064 ~ 22665912 (+)
G14484 LOC107568745 non-coding upstream 546888 21913520 ~ 21915028 (+)
G14477 NA non-coding upstream 566438 21895171 ~ 21895478 (+)
G14476 NA non-coding upstream 566785 21894608 ~ 21895131 (+)
LOC122359002 NA non-coding upstream 649013 21810929 ~ 21812903 (+)
G14316 NA non-coding upstream 741341 21719918 ~ 21720575 (+)
G14540 NA non-coding downstream 26516 22512171 ~ 22513937 (+)
G14541 NA non-coding downstream 36756 22522411 ~ 22586250 (+)
G14542 NA non-coding downstream 91368 22577023 ~ 22578223 (+)
G14549 NA non-coding downstream 158140 22643795 ~ 22650843 (+)
G14578 NA non-coding downstream 256772 22742427 ~ 22786013 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 594517 21857212 ~ 21867399 (+)
G14471 NA other upstream 600474 21860891 ~ 21861442 (+)
LOC122327294 aknad1,LOC107749213,LOC107660326,LOC107730428,LOC107671582 other upstream 608909 21843575 ~ 21853007 (+)
ccl20a.3 LOC107749165,LOC107660500,LOC107557866 other upstream 745626 21714683 ~ 21716290 (+)
ece2a ece2a,LOC107660439,LOC107600061,LOC107557862 other upstream 840819 21533245 ~ 21621097 (+)
LOC122327931 NA other downstream 147874 22633529 ~ 22674275 (+)
fcer1gl LOC107671799 other downstream 205544 22691199 ~ 22695330 (+)
LOC122324535 NA other downstream 517510 23003165 ~ 23005254 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 1059451 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 1450266 23935921 ~ 23939016 (+)

Expression


Co-expression Network