LOC122324535


Basic Information

Item Value
gene id LOC122324535
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23003165 ~ 23005254 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU21584
CGCCGCTTCCGCAGTTTGCCGCGCGTTTCCTGTGCTCGTTCTGCTCTTCACACACGTCCGATCATGTTGGGCAAAATAATCGGTCAGAAATACGTGTCTATCGCGAGAACATGGGTTCCCACGCTCGCCGTCTGGGGTGGAGCTGGAGGCGTAGCTCTCGTTCACTTCACCGACTGGAGGATCATCTTGGACTACGTGCCGTACATCAACGGAAAGTTCAAGAAGGACGATTAGATCAAGTCTTGCTGTGGACGGGCTGAAGATGGAGATGTTTGTCAGTGCCGGAGAAGAAGACCTCTAGTGAATCATCACTGCTAATGaacaatgtgtatttatttcgGAGCGTTCAATTCATTCGATCAAAATCGAATGATTATAAAGATCATGTATGTAACGCCGGAGTGTTTTCTGTGCTTTGTCGTTTCTTTCCACTGAATCCTCATGGAATAAATACTCTCTAA
>XM_043219049.1
GTAAagacttttaatttgtaaacGTCGCTCGGTACGTGACGCCGCTTCCGCAGTTTGCCGCGCGTTTCCTGTGCTCGTTCTGCTCTTCACACACGTCCGATCATGTTGGGCAAAATAATCGGTCAGAAATACGTGTCTATCGCGAGAACATGGGTTCCCACGCTCGCCGTCTGGGGTGGAGCTGGAGGCGTAGCTCTCGTTCACTTCACCGACTGGAGGATCATCTTGGACTACGTGCCGTACATCAACGGAAAGTTCAAGAAGGACGATTAGATCAAGTCTTGCTGTGGACGGGCTGAAGATGGAGATGTTTGTCAGTGCCGGAGAAGAAGACCTCTAGTGAATCATCACTGCTAATGaacaatgtgtatttatttcgGAGCGTTCAATTCATTCATCCCTCGTGAAAGGTCTCACGATCAAAATCGAATGATTATAAAGATCATGTATGTAACGCCGGAGTGTTTTCTGTGCTTTGTCGTTTCTTTCCACTGAATCCTCATGGAATAAATACTCTCTAATATTCTGTTATAGAGAACGTCACGGTGGACCTCAActcttctttttaattttgttcatcTGTTCAGTCGTAGGTTACTGGTGATgcttgttaataaataaaagaaaatgaatctgA

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU21584 False 461 lncRNA 0.38 4 23003204 23005138
XM_043219049.1 True 637 mRNA 0.44 3 23003165 23005254

Neighbor

gene id symbol gene type direction distance location
tcf3a LOC107671808,LOC107696481,LOC107724980,LOC107552693 coding upstream 4649 22958986 ~ 22998516 (+)
map2k2b map2k2b,LOC107671813,LOC107726325,LOC107696522,LOC108427153 coding upstream 56307 22938787 ~ 22946858 (+)
pias4b NA coding upstream 65337 22926313 ~ 22937828 (+)
LOC122328301 LOC107696585,LOC107552683,LOC107724989,LOC107549819,LOC107671817,LOC100151059,LOC108427150 coding upstream 132193 22833068 ~ 22870972 (+)
sf3a2 sf3a2,LOC107726326,LOC107696543,LOC107671791,LOC107750226 coding upstream 218319 22780823 ~ 22784846 (+)
mbd3a mbd3,LOC107713415,LOC107696467,LOC107552695,LOC108427158,LOC107724987 coding downstream 643 23005897 ~ 23016480 (+)
LOC122325295 mex3d,LOC107552694,LOC107713414,LOC107724985,LOC107696452,LOC107596262 coding downstream 13103 23018357 ~ 23025395 (+)
LOC122327352 LOC107572994,LOC107569272 coding downstream 244938 23250192 ~ 23260474 (+)
wu:fb63a08 LOC107749217,LOC107572082,LOC107660374 coding downstream 419440 23424694 ~ 23442701 (+)
scg2b LOC107552496,LOC107552495,LOC107660152,LOC107738796 coding downstream 525516 23530770 ~ 23533357 (+)
G14589 NA non-coding upstream 123700 22847913 ~ 22879465 (+)
LOC122328317 NA non-coding upstream 173620 22813266 ~ 22829545 (+)
LOC122357472 NA non-coding upstream 200692 22786721 ~ 22802473 (+)
G14578 NA non-coding upstream 217152 22742427 ~ 22786013 (+)
G14553 NA non-coding upstream 226162 22776240 ~ 22777003 (+)
G14605 NA non-coding downstream 21526 23026780 ~ 23028239 (+)
G14607 NA non-coding downstream 23913 23029167 ~ 23029879 (+)
G14611 NA non-coding downstream 41379 23046633 ~ 23049972 (+)
G14772 NA non-coding downstream 152844 23158098 ~ 23179131 (+)
G14778 NA non-coding downstream 174191 23179445 ~ 23179755 (+)
fcer1gl LOC107671799 other upstream 307835 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 328890 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 517510 22461916 ~ 22485655 (+)
fndc7a fndc7a,LOC107660526,LOC107671595,LOC107730461,LOC107568736 other upstream 1135766 21857212 ~ 21867399 (+)
G14471 NA other upstream 1141723 21860891 ~ 21861442 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other downstream 539852 23545106 ~ 23547974 (+)
LOC122323670 NA other downstream 930667 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 1040431 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 1054158 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 1078584 24083838 ~ 24096897 (+)

Expression


Co-expression Network