G14837 (cul3a,LOC107679386,LOC102194569,LOC105907048,LOC107567698,LOC107724810)


Basic Information

Item Value
gene id G14837
gene name cul3a,LOC107679386,LOC102194569,LOC105907048,LOC107567698,LOC107724810
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23558249 ~ 23562352 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU21987
TGTTGATGAGGTGTTCGGTGACCACCTCTCTGAGGCCCGTGTAGAGCTTCTCCCCATGTTTGTGCAACACCATGGTGTAGGCGTTCCTGTAGAGCTCCTCGAAGCTCAGCCCACTGTTGTTCTTCCGCTGGATCTCCTGAATGGCGTTCTTCAGAAGATCCCAGATGTTATTCACATACTTCTCATCCATGGTCATCGGGAAAGGCGCGGATCCGCATCTTGGTGTCCTTCTTGGTGCCGGGTTTAAGGTTGGACATGTTTGGGTTCGGGAGTGATGCCATCAACAGATGTTAGGGTGGGTGTGTTGAGGGGAAACACGGACAAATCTCGCCCTCTTTCCCCCCCAGGTTTGAGTCCCTGTAGCttactctctctccctctgtctctacAGCGATGGCGGACGACTGGATGACATCTCG

Function

symbol description
cul3a Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be part of Cul3-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in pseudohypoaldosteronism. Orthologous to human CUL3 (cullin 3).

NR:

description
PREDICTED: cullin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21987 True 419 lncRNA 0.36 2 23558249 23562352

Neighbor

gene id symbol gene type direction distance location
scg2b LOC107552496,LOC107552495,LOC107660152,LOC107738796 coding upstream 24892 23530770 ~ 23533357 (+)
wu:fb63a08 LOC107749217,LOC107572082,LOC107660374 coding upstream 115548 23424694 ~ 23442701 (+)
LOC122327352 LOC107572994,LOC107569272 coding upstream 297775 23250192 ~ 23260474 (+)
LOC122325295 mex3d,LOC107552694,LOC107713414,LOC107724985,LOC107696452,LOC107596262 coding upstream 532854 23018357 ~ 23025395 (+)
mbd3a mbd3,LOC107713415,LOC107696467,LOC107552695,LOC108427158,LOC107724987 coding upstream 541769 23005897 ~ 23016480 (+)
mbnl1 mbnl1,LOC107724811,LOC107573627,LOC107745615,LOC107679403,LOC107567699 coding downstream 1412 23563764 ~ 23624866 (+)
LOC122354760 NA coding downstream 62655 23625007 ~ 23630373 (+)
LOC122354999 NA coding downstream 71870 23634222 ~ 23637430 (+)
klf6b klf6,LOC107698482,LOC107679408,LOC107572997,LOC107724813,LOC107569266,LOC107728392 coding downstream 135905 23698257 ~ 23702264 (+)
pitrm1 pitrm1,LOC107698483,LOC107679400,LOC107724807 coding downstream 141149 23703501 ~ 23715237 (+)
G14832 LOC101170875,LOC106580681,LOC106612448 non-coding upstream 5016 23550605 ~ 23553233 (+)
G14779 NA non-coding upstream 377092 23180731 ~ 23181157 (+)
G14778 NA non-coding upstream 378494 23179445 ~ 23179755 (+)
G14772 NA non-coding upstream 379118 23158098 ~ 23179131 (+)
G14611 NA non-coding upstream 508277 23046633 ~ 23049972 (+)
LOC122355031 NA non-coding downstream 80111 23642463 ~ 23643550 (+)
G14850 LOC107724821,LOC107698475,LOC107573003,LOC107709797,LOC107680183,LOC107577770 non-coding downstream 106211 23668563 ~ 23683398 (+)
G14841 NA non-coding downstream 128070 23690422 ~ 23691860 (+)
G14859 NA non-coding downstream 157290 23719642 ~ 23762825 (+)
G14860 NA non-coding downstream 159914 23722266 ~ 23722747 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 10275 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 552995 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 862919 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 883974 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 1072594 22461916 ~ 22485655 (+)
LOC122323670 NA other downstream 373569 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 483333 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 497060 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 521486 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 679520 24241872 ~ 24249991 (+)

Expression


Co-expression Network