G14896 (per2,LOC107572994,LOC107698490)


Basic Information

Item Value
gene id G14896
gene name per2,LOC107572994,LOC107698490
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 23803784 ~ 23804629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU22081
CTTCCACCTGTCTGACGCATCGCAGGGCATATTTCAGAGTGTTGAGCGTCGTCGACTTGCTGCCCTTGTTTCGCTTTTCTGGCGGCAAATGAAGCTTCAGCTCTTTCAAAGTTTTGATTAACTCTTTTTGTGTCTTCGCCTTGGCGGACTCTTCGCTACTGCAGCCGCTGGTAGATGGGTTGTCCTGCTCTGAACTGGCACTCAGAAGGCTGAAGGCGTTCGTGCTGCTGGGCGGCGAAGGACTATGAGAGTTGGAGCTGTAAAGAAACATGAaggcatcataaaaaaaacaagtcataaaCTACAAACAACTCCTTTATGAATGGTAATCTCTGCAGATGTAATTTTATCATG

Function

symbol description
per2 Enables chromatin binding activity. Acts upstream of or within several processes, including circadian regulation of gene expression; entrainment of circadian clock by photoperiod; and locomotor rhythm. Predicted to be active in cytoplasm and nucleus. Is expressed in heart; liver; muscle; nervous system; and ovary. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome and advanced sleep phase syndrome 1. Orthologous to human PER2 (period circadian regulator 2).

NR:

description
PREDICTED: period circadian protein homolog 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22081 True 354 lncRNA 0.41 2 23803784 23804629

Neighbor

gene id symbol gene type direction distance location
hes6 hes6,LOC107737402,LOC107572989,LOC107728379,LOC107569265,LOC107679391 coding upstream 17529 23783724 ~ 23786255 (+)
lpar5a LOC107737401,LOC107698486,LOC107572991,LOC107679392,LOC107728381,LOC107569267 coding upstream 28601 23772880 ~ 23775183 (+)
LOC122356725 LOC107698487,LOC107737400,LOC107679394,LOC107572992,LOC107728385,LOC107569271,LOC793909 coding upstream 33292 23765958 ~ 23770492 (+)
trnaw-cca_1 NA coding upstream 66662 23737051 ~ 23737122 (+)
pitrm1 pitrm1,LOC107698483,LOC107679400,LOC107724807 coding upstream 88547 23703501 ~ 23715237 (+)
LOC122323665 NA coding downstream 115602 23920231 ~ 23925631 (+)
LOC122323657 NA coding downstream 125002 23929631 ~ 23931889 (+)
LOC122328481 LOC107599284 coding downstream 190554 23995183 ~ 23997150 (+)
LOC122324443 NA coding downstream 224375 24029004 ~ 24032203 (+)
LOC122327432 LOC107549368 coding downstream 266580 24071209 ~ 24073204 (+)
G14863 LOC107728390,LOC107572994,LOC107737392,LOC107569272 non-coding upstream 7881 23791262 ~ 23795903 (+)
G14889 NA non-coding upstream 23664 23777103 ~ 23780120 (+)
G14859 NA non-coding upstream 40959 23719642 ~ 23762825 (+)
G14872 NA non-coding upstream 57231 23744871 ~ 23746553 (+)
G14860 NA non-coding upstream 81037 23722266 ~ 23722747 (+)
G14978 NA non-coding downstream 74549 23879178 ~ 23879604 (+)
G14979 NA non-coding downstream 79133 23883762 ~ 23884416 (+)
G14988 NA non-coding downstream 122411 23927040 ~ 23927250 (+)
G14989 NA non-coding downstream 122665 23927294 ~ 23927613 (+)
LOC122328475 NA non-coding downstream 181129 23985758 ~ 23986203 (+)
G14831 LOC107679389,LOC107745621,LOC107567694,LOC108428304 other upstream 255810 23545106 ~ 23547974 (+)
LOC122324535 NA other upstream 798530 23003165 ~ 23005254 (+)
fcer1gl LOC107671799 other upstream 1108454 22691199 ~ 22695330 (+)
LOC122327931 NA other upstream 1129509 22633529 ~ 22674275 (+)
LOC122327302 LOC107705949,LOC107599389,LOC107675701,LOC107737183,LOC107661566,LOC107586444,LOC107679834,LOC107719545,LOC107717972 other upstream 1318129 22461916 ~ 22485655 (+)
LOC122323670 NA other downstream 131292 23935921 ~ 23939016 (+)
LOC122327416 LOC107728372,LOC107569261,LOC107681443 other downstream 241056 24045685 ~ 24048465 (+)
LOC122327425 LOC107728372,LOC107569261,LOC107681443 other downstream 254783 24059412 ~ 24062202 (+)
LOC122327442 LOC107549368,LOC107569260,LOC107737397,LOC107681447,LOC107681444 other downstream 279209 24083838 ~ 24096897 (+)
abhd17aa abhd17aa,LOC107599293,LOC107757810,LOC107698472,LOC107600230,LOC108433103,LOC105904035,LOC108280794 other downstream 437243 24241872 ~ 24249991 (+)

Expression


Co-expression Network